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David Schaller
David Schaller
Bestätigte E-Mail-Adresse bei bioinf.uni-leipzig.de
Titel
Zitiert von
Zitiert von
Jahr
Complete characterization of incorrect orthology assignments in best match graphs
D Schaller, M Geiß, PF Stadler, M Hellmuth
Journal of Mathematical Biology 82 (3), 1-64, 2021
192021
From pairs of most similar sequences to phylogenetic best matches
PF Stadler, M Geiß, D Schaller, A López Sánchez, M González Laffitte, ...
Algorithms for Molecular Biology 15 (1), 1-20, 2020
172020
Indirect identification of horizontal gene transfer
D Schaller, M Lafond, PF Stadler, N Wieseke, M Hellmuth
Journal of Mathematical Biology 83 (1), 1-73, 2021
152021
Corrigendum to “Best match graphs”
D Schaller, M Geiß, E Chávez, M González Laffitte, A López Sánchez, ...
Journal of Mathematical Biology 82, 1-9, 2021
122021
Complexity of modification problems for best match graphs
D Schaller, PF Stadler, M Hellmuth
Theoretical Computer Science, 2021
112021
Best match graphs with binary trees
D Schaller, M Geiß, M Hellmuth, PF Stadler
International Conference on Algorithms for Computational Biology, 82-93, 2021
102021
Clustering systems of phylogenetic networks
M Hellmuth, D Schaller, PF Stadler
Theory in Biosciences 142 (4), 301-358, 2023
72023
Compatibility of partitions with trees, hierarchies, and split systems
M Hellmuth, D Schaller, PF Stadler
Discrete Applied Mathematics 314, 265-283, 2022
72022
Heuristic algorithms for best match graph editing
D Schaller, M Geiß, M Hellmuth, PF Stadler
Algorithms for Molecular Biology 16 (1), 1-32, 2021
62021
A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set
D Schaller, M Hellmuth, PF Stadler
Algorithms for Molecular Biology 16 (1), 1-11, 2021
52021
Combining orthology and xenology data in a common phylogenetic tree
M Hellmuth, M Michel, NN Nøjgaard, D Schaller, PF Stadler
Brazilian Symposium on Bioinformatics, 53-64, 2021
52021
AsymmeTree: A Flexible Python Package for the Simulation of Complex Gene Family Histories
D Schaller, M Hellmuth, PF Stadler
Software 1 (3), 276-298, 2022
42022
Best match graphs with binary trees
D Schaller, M Geiß, M Hellmuth, PF Stadler
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2022
42022
Arc-Completion of 2-Colored Best Match Graphs to Binary-Explainable Best Match Graphs
D Schaller, M Geiß, M Hellmuth, PF Stadler
Algorithms 14 (4), 110, 2021
42021
From best hits to best matches
PF Stadler, M Geiß, D Schaller, AL Sánchez, ME González, DI Valdivia, ...
arXiv preprint arXiv:2001.00958, 2020
32020
Relative timing information and orthology in evolutionary scenarios
D Schaller, T Hartmann, M Lafond, PF Stadler, N Wieseke, M Hellmuth
Algorithms for Molecular Biology 18 (1), 16, 2023
12023
Orientation of Fitch Graphs and Detection of Horizontal Gene Transfer in Gene Trees
D Schaller, M Hellmuth, PF Stadler
arXiv preprint arXiv:2112.00403, 2021
12021
Gene family histories: theory and algorithms
D Schaller
Max Planck Institute for Mathematics in the Sciences, Max Planck Society, 2021
12021
A linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set
D Schaller, M Hellmuth, PF Stadler
CoRR, 2021
12021
Least resolved trees for two-colored best match graphs
D Schaller, M Geiß, M Hellmuth, PF Stadler
arXiv preprint arXiv:2101.07000, 2021
12021
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