Oliver Alka
Oliver Alka
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Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
Current challenges in plant eco-metabolomics
K Peters, A Worrich, A Weinhold, O Alka, G Balcke, C Birkemeyer, ...
International Journal of Molecular Sciences 19 (5), 1385, 2018
Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context
M Morgenstern, CD Peikert, P Lübbert, I Suppanz, C Klemm, O Alka, ...
Cell metabolism 33 (12), 2464-2483. e18, 2021
OpenMS–a platform for reproducible analysis of mass spectrometry data
J Pfeuffer, T Sachsenberg, O Alka, M Walzer, A Fillbrunn, L Nilse, ...
Journal of biotechnology 261, 142-148, 2017
mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics
N Hoffmann, J Rein, T Sachsenberg, J Hartler, K Haug, G Mayer, O Alka, ...
Analytical chemistry 91 (5), 3302-3310, 2019
Untargeted metabolomics reveals molecular effects of ketogenic diet on healthy and tumor xenograft mouse models
D Licha, S Vidali, S Aminzadeh-Gohari, O Alka, L Breitkreuz, ...
International journal of molecular sciences 20 (16), 3873, 2019
SmartPeak automates targeted and quantitative metabolomics data processing
S Kutuzova, P Colaianni, H Rost, T Sachsenberg, O Alka, O Kohlbacher, ...
Analytical chemistry 92 (24), 15968-15974, 2020
Food fingerprinting: Mass spectrometric determination of the cocoa shell content (Theobroma cacao L.) in cocoa products by HPLC-QTOF-MS
N Cain, O Alka, T Segelke, K von Wuthenau, O Kohlbacher, M Fischer
Food chemistry 298, 125013, 2019
DIAproteomics: A multifunctional data analysis pipeline for data-independent acquisition proteomics and peptidomics
L Bichmann, S Gupta, G Rosenberger, L Kuchenbecker, T Sachsenberg, ...
Journal of Proteome Research 20 (7), 3758-3766, 2021
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics
O Alka, P Shanthamoorthy, M Witting, K Kleigrewe, O Kohlbacher, ...
Nature Communications 13 (1), 1347, 2022
Metabolomics data processing using OpenMS
M Rurik, O Alka, F Aicheler, O Kohlbacher
Computational Methods and Data Analysis for Metabolomics, 49-60, 2020
Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells
T Scheidt, O Alka, H Gonczarowska-Jorge, W Gruber, F Rathje, ...
Cell Communication and Signaling 18 (1), 1-18, 2020
OpenMS and KNIME for Mass Spectrometry Data Processing
O Alka, T Sachsenberg, L Bichmann, J Pfeuffer, H Weisser, S Wein, ...
Processing metabolomics and proteomics data with open software, 201-231, 2020
UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis
EE Kontou, A Walter, O Alka, J Pfeuffer, T Sachsenberg, OS Mohite, ...
Journal of Cheminformatics 15 (1), 52, 2023
Investigation of the anti-cancer potential of epoxyazadiradione in neuroblastoma: experimental assays and molecular analysis
S Chandel, A Bhattacharya, A Gautam, W Zeng, O Alka, T Sachsenberg, ...
Journal of Biomolecular Structure and Dynamics, 1-19, 2023
OpenMS 3 expands the frontiers of open-source computational mass spectrometry
T Sachsenberg, J Pfeuffer, C Bielow, S Wein, K Jeong, E Netz, A Walter, ...
OpenSWATH Enables Automated Data Processing for Data-Independent Acquisition in Metabolomics
O Alka, M Witting, K Kleigrewe, O Kohlbacher, L Röst
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