Jamie McCusker

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Deborah L. McGuinnessTetherless World Chair, Prof. Computer, Cognitive,Web Sciences, Industrial &Systems Engineering,RPIVerified email at cs.rpi.edu
Michael KrauthammerUniversity of ZurichVerified email at uzh.ch
Timothy LeboRensselaer Polytechnic InstituteVerified email at rpi.edu
Sabbir M. RashidRensselaer Polytechnic InstituteVerified email at rpi.edu
Michel DumontierDistinguished Professor of Data Science, Maastricht UniversityVerified email at maastrichtuniversity.nl
Sam CoppensAmazonVerified email at amazon.com
Stephan AriyanProfessor of Surgery, Yale UniversityVerified email at yale.edu
Ruth HalabanYale UniversityVerified email at yale.edu
Shruthi ChariPhD Student in Computer Science, Rensselaer Polytechnic InstituteVerified email at rpi.edu
Oshani SeneviratneRensselaer Polytechnic InstituteVerified email at rpi.edu
Kristin P. BennettProfessor of Mathematical Sciences, Renssealer Polytechnic InstituteVerified email at rpi.edu
Satya SahooMedical Informatics and Computer Science, Case Western Reserve UniversityVerified email at case.edu
Khalid BelhajjamePSL, Université Paris-Dauphine, LAMSADEVerified email at dauphine.fr
Paul GrothProfessor, INDE Lab, University of AmsterdamVerified email at uva.nl
John S. EricksonDirector of Research Operations, The Rensselaer IDEA; Director of Web Science Operations, TetherlessVerified email at rpi.edu
LC BrinsonDuke UniversityVerified email at duke.edu
Amar K. DasVice President of Real World Evidence, Guardant HealthVerified email at guardanthealth.com
Yolanda GilResearch Professor of Computer Science, University of Southern CaliforniaVerified email at isi.edu
James CheneyProfessor, Laboratory for Foundations of Computer Science, University of EdinburghVerified email at inf.ed.ac.uk
Simon MilesHead of AI, AerogilityVerified email at aerogility.com

Jamie McCusker

Rensselaer Polytechnic Institute

Verified email at rpi.edu

Knowledge Graphs Semantic Web Computational Biology Provenance


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Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma M Krauthammer, Y Kong, BH Ha, P Evans, A Bacchiocchi, JP McCusker, ... Nature genetics 44 (9), 1006-1014, 2012	1268	2012
Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas M Krauthammer, Y Kong, A Bacchiocchi, P Evans, N Pornputtapong, ... Nature genetics 47 (9), 996-1002, 2015	407	2015
PLX4032, a selective BRAF^V600E kinase inhibitor, activates the ERK pathway and enhances cell migration and proliferation of BRAF^WT melanoma cells R Halaban, W Zhang, A Bacchiocchi, E Cheng, F Parisi, S Ariyan, ... Pigment cell & melanoma research 23 (2), 190-200, 2010	379	2010
When owl: sameas isn’t the same: An analysis of identity in linked data H Halpin, PJ Hayes, JP McCusker, DL McGuinness, HS Thompson The Semantic Web–ISWC 2010: 9th International Semantic Web Conference, ISWC …, 2010	374	2010
Prov-dm: The prov data model L Moreau, P Missier, K Belhajjame, R B’Far, J Cheney, S Coppens, ... w3c, 2013	367	2013
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery M Dumontier, CJO Baker, J Baran, A Callahan, L Chepelev, ... Journal of biomedical semantics 5, 1-11, 2014	211	2014
The PROV data model and abstract syntax notation L Moreau, P Missier, K Belhajjame, S Cresswell, Y Gil, R Golden, P Groth, ... W3C Working Draft.(Work in progress.), 2011	161*	2011
Yale Image Finder (YIF): a new search engine for retrieving biomedical images S Xu, J McCusker, M Krauthammer Bioinformatics 24 (17), 1968-1970, 2008	130	2008
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside JS Luciano, B Andersson, C Batchelor, O Bodenreider, T Clark, ... Journal of biomedical semantics 2 (2), 1-21, 2011	111	2011
Semantic web data warehousing for caGrid JP McCusker, JA Phillips, AG Beltrán, A Finkelstein, M Krauthammer BMC bioinformatics 10 (10), 1-10, 2009	46	2009
NanoMine schema: An extensible data representation for polymer nanocomposites H Zhao, Y Wang, A Lin, B Hu, R Yan, J McCusker, W Chen, ... APL Materials 6 (11), 111108, 2018	42	2018
Linked provenance data: A semantic Web-based approach to interoperable workflow traces L Ding, J Michaelis, J McCusker, DL McGuinness Future Generation Computer Systems 27 (6), 797-805, 2011	39	2011
Finding melanoma drugs through a probabilistic knowledge graph JP McCusker, M Dumontier, R Yan, S He, JS Dordick, DL McGuinness PeerJ Computer Science 3, e106, 2017	32	2017
A semantic web framework to integrate cancer omics data with biological knowledge ME Holford, JP McCusker, KH Cheung, M Krauthammer BMC bioinformatics 13, 1-12, 2012	26	2012
The semantic data dictionary–an approach for describing and annotating data SM Rashid, JP McCusker, P Pinheiro, MP Bax, HO Santos, JA Stingone, ... Data intelligence 2 (4), 443-486, 2020	25	2020
Translating standards into practice: one semantic web API for gene expression HF Deus, J Zhao, JP McCusker, R Fox, E Prud'hommeaux, J Malone, ... Proceedings of the 4th International Workshop on Semantic Web Applications …, 2011	25	2011
Parallel Identities for Managing Open Government Data JP McCusker, T Lebo, C Chang, PP da Silva, DL McGuinness IEEE Intelligent Systems, 2012	23	2012
Towards identity in linked data J McCusker, D McGuinness Proceedings of OWL: Experience and Directions, San Francisco, USA (June 21 …, 2010	23	2010
Polymer nanocomposite data: curation, frameworks, access, and potential for discovery and design LC Brinson, M Deagen, W Chen, J McCusker, DL McGuinness, ... ACS Macro Letters 9 (8), 1086-1094, 2020	22	2020
What is a knowledge graph JP McCusker, J Erickson, K Chastain, S Rashid, R Weerawarana, ... Semantic Web Journal, 2018	20	2018

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