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Karoline Faust
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Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
100272012
Microbial interactions: from networks to models
K Faust, J Raes
Nature Reviews Microbiology 10 (8), 538-550, 2012
30802012
A framework for human microbiome research
Nature 486 (7402), 215-221, 2012
2362*2012
Population-level analysis of gut microbiome variation
G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ...
Science 352 (6285), 560-564, 2016
20802016
Microbial co-occurrence relationships in the human microbiome
K Faust, JF Sathirapongsasuti, J Izard, N Segata, D Gevers, J Raes, ...
PLoS computational biology 8 (7), e1002606, 2012
14942012
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 1262073, 2015
8622015
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
6662016
CoNet app: inference of biological association networks using Cytoscape
K Faust, J Raes
F1000Research 5, 2016
4862016
Computational approaches to predict bacteriophage–host relationships
RA Edwards, K McNair, K Faust, J Raes, BE Dutilh
FEMS microbiology reviews 40 (2), 258-272, 2016
4152016
Metagenomics meets time series analysis: unraveling microbial community dynamics
K Faust, L Lahti, D Gonze, WM De Vos, J Raes
Current opinion in microbiology 25, 56-66, 2015
4152015
From hairballs to hypotheses–biological insights from microbial networks
L Röttjers, K Faust
FEMS microbiology reviews 42 (6), 761-780, 2018
4092018
Earth microbial co-occurrence network reveals interconnection pattern across microbiomes
B Ma, Y Wang, S Ye, S Liu, E Stirling, JA Gilbert, K Faust, R Knight, ...
Microbiome 8 (1), 1-12, 2020
2622020
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
P Hingamp, N Grimsley, SG Acinas, C Clerissi, L Subirana, J Poulain, ...
The ISME journal 7 (9), 1678-1695, 2013
2152013
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
M Bálint, M Bahram, AM Eren, K Faust, JA Fuhrman, B Lindahl, RB O'Hara, ...
FEMS microbiology reviews 40 (5), 686-700, 2016
1972016
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
C Lozupone, K Faust, J Raes, JJ Faith, DN Frank, J Zaneveld, JI Gordon, ...
Genome research 22 (10), 1974-1984, 2012
1912012
Soil microbiome responses to the short‐term effects of Amazonian deforestation
AA Navarrete, SM Tsai, LW Mendes, K Faust, M de Hollander, ...
Molecular ecology 24 (10), 2433-2448, 2015
1812015
Cross-biome comparison of microbial association networks
K Faust, G Lima-Mendez, JS Lerat, JF Sathirapongsasuti, R Knight, ...
Frontiers in microbiology 6, 1200, 2015
1692015
Microbial communities as dynamical systems
D Gonze, KZ Coyte, L Lahti, K Faust
Current opinion in microbiology 44, 41-49, 2018
1532018
Synthetic ecology of the human gut microbiota
G Vrancken, AC Gregory, GRB Huys, K Faust, J Raes
Nature Reviews Microbiology 17 (12), 754-763, 2019
1462019
Open challenges for microbial network construction and analysis
K Faust
The ISME Journal 15 (11), 3111-3118, 2021
1302021
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Articles 1–20