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Debayan Chakraborty
Debayan Chakraborty
Reader F, The Institute of Mathematical Sciences, Chennai
Keine bestätigte E-Mail-Adresse
Titel
Zitiert von
Zitiert von
Jahr
Sequence effects on size, shape, and structural heterogeneity in intrinsically disordered proteins
U Baul, D Chakraborty, ML Mugnai, JE Straub, D Thirumalai
The Journal of Physical Chemistry B 123 (16), 3462-3474, 2019
1362019
Intrinsically disordered energy landscapes
Y Chebaro, AJ Ballard, D Chakraborty, DJ Wales
Scientific reports 5 (1), 10386, 2015
1032015
Coarse-grained simulations of DNA overstretching
F Romano, D Chakraborty, JPK Doye, TE Ouldridge, AA Louis
The Journal of chemical physics 138 (8), 2013
882013
Exploring biomolecular energy landscapes
JA Joseph, K Röder, D Chakraborty, RG Mantell, DJ Wales
Chemical communications 53 (52), 6974-6988, 2017
812017
Energy Landscapes, Folding Mechanism, and Kinetics of RNA Tetraloop Hairpins
D Chakraborty, R Collepardo-Guevara, W David J.
Journal of the American Chemical Society 136, 18052-18061, 2014
662014
Differences in the free energies between the excited states of Aβ40 and Aβ42 monomers encode their distinct aggregation propensities
D Chakraborty, JE Straub, D Thirumalai
Proceedings of the National Academy of Sciences USA 117 (33), 19926-19937, 2020
602020
Sequence-Dependent Three Interaction Site Model for Single- and Double-Stranded DNA
D Chakraborty, N Hori, D Thirumalai
Journal of chemical theory and computation 14 (7), 3763-3779, 2018
552018
Charge fluctuation effects on the shape of flexible polyampholytes with applications to intrinsically disordered proteins
HS Samanta, D Chakraborty, D Thirumalai
The Journal of Chemical Physics 149 (16), 163323, 2018
502018
Energy landscape and pathways for transitions between Watson–Crick and Hoogsteen base pairing in DNA
D Chakraborty, DJ Wales
The journal of physical chemistry letters 9 (1), 229-241, 2018
392018
Structure and properties of DNA in apolar solvents
A Arcella, G Portella, R Collepardo-Guevara, D Chakraborty, DJ Wales, ...
The Journal of Physical Chemistry B 118 (29), 8540-8548, 2014
372014
Computational Investigation of RNA CUG Repeats Responsible for Myotonic Dystrophy 1
I Yildirim, D Chakraborty, MD Disney, DJ Wales, GC Schatz
Journal of Chemical Theory and Computation 11 (10), 4943-4958, 2015
292015
Multifunctional energy landscape for a DNA G-quadruplex: An evolved molecular switch
T Cragnolini, D Chakraborty, J Šponer, P Derreumaux, S Pasquali, ...
The Journal of Chemical Physics 147 (15), 2017
282017
Conformational energy landscape of the ritonavir molecule
D Chakraborty, N Sengupta, DJ Wales
The Journal of Physical Chemistry B 120 (19), 4331-4340, 2016
262016
Probing helical transitions in a DNA duplex
D Chakraborty, DJ Wales
Physical Chemistry Chemical Physics 19 (1), 878-892, 2017
232017
Energy landscape for fold-switching in regulatory protein RfaH
JA Joseph, D Chakraborty, DJ Wales
Journal of Chemical Theory and Computation 15 (1), 731-742, 2018
212018
Sequence determines the switch in the fibril forming regions in the low-complexity FUS protein and its variants
A Kumar, D Chakraborty, ML Mugnai, JE Straub, D Thirumalai
The journal of physical chemistry letters 12 (37), 9026-9032, 2021
162021
Dynamics of an adenine-adenine RNA conformational switch from discrete path sampling
D Chakraborty, DJ Wales
The Journal of Chemical Physics 150 (12), 2019
142019
Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages
D Chakraborty, JE Straub, D Thirumalai
Science Advances 9 (12), eadd6921, 2023
132023
Energy landscapes and hybridization pathways for DNA hexamer duplexes
S Xiao, DJ Sharpe, D Chakraborty, DJ Wales
The Journal of Physical Chemistry Letters 10 (21), 6771-6779, 2019
132019
Photoinduced charge transfer in solvated anthraquinones is facilitated by low-frequency ring deformations
A Jha, D Chakraborty, V Srinivasan, J Dasgupta
The Journal of Physical Chemistry B 117 (40), 12276-12285, 2013
102013
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