Hongzhe Li, PhD
Title
Cited by
Cited by
Year
Linking long-term dietary patterns with gut microbial enterotypes
GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ...
Science 334 (6052), 105-108, 2011
46152011
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
RA Koeth, Z Wang, BS Levison, JA Buffa, E Org, BT Sheehy, EB Britt, X Fu, ...
Nature medicine 19 (5), 576-585, 2013
27632013
The human gut virome: inter-individual variation and dynamic response to diet
S Minot, R Sinha, J Chen, H Li, SA Keilbaugh, GD Wu, JD Lewis, ...
Genome research 21 (10), 1616-1625, 2011
7312011
Network-constrained regularization and variable selection for analysis of genomic data
C Li, H Li
Bioinformatics 24 (9), 1175-1182, 2008
5622008
Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents
C Hoffmann, S Dollive, S Grunberg, J Chen, H Li, GD Wu, JD Lewis, ...
PloS one 8 (6), e66019, 2013
5122013
Associating microbiome composition with environmental covariates using generalized UniFrac distances
J Chen, K Bittinger, ES Charlson, C Hoffmann, J Lewis, GD Wu, ...
Bioinformatics 28 (16), 2106-2113, 2012
5092012
Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota
L Albenberg, TV Esipova, CP Judge, K Bittinger, J Chen, A Laughlin, ...
Gastroenterology 147 (5), 1055-1063. e8, 2014
4452014
Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
JD Lewis, EZ Chen, RN Baldassano, AR Otley, AM Griffiths, D Lee, ...
Cell host & microbe 18 (4), 489-500, 2015
4392015
Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data
J Gui, H Li
Bioinformatics 21 (13), 3001-3008, 2005
4252005
Clustering of time-course gene expression data using a mixed-effects model with B-splines
Y Luan, H Li
Bioinformatics 19 (4), 474-482, 2003
4252003
Copy number variation at 1q21. 1 associated with neuroblastoma
SJ Diskin, C Hou, JT Glessner, EF Attiyeh, M Laudenslager, K Bosse, ...
Nature 459 (7249), 987-991, 2009
3862009
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
GD Wu, JD Lewis, C Hoffmann, YY Chen, R Knight, K Bittinger, J Hwang, ...
BMC microbiology 10 (1), 1-14, 2010
3732010
Variants of DENND1B associated with asthma in children
PMA Sleiman, J Flory, M Imielinski, JP Bradfield, K Annaiah, ...
New England Journal of Medicine 362 (1), 36-44, 2010
3612010
Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production
GD Wu, C Compher, EZ Chen, SA Smith, RD Shah, K Bittinger, ...
Gut 65 (1), 63-72, 2016
3232016
A functional genomic approach identifies FAL1 as an oncogenic long noncoding RNA that associates with BMI1 and represses p21 expression in cancer
X Hu, Y Feng, D Zhang, SD Zhao, Z Hu, J Greshock, Y Zhang, L Yang, ...
Cancer Cell 26 (3), 344-357, 2014
3032014
Disordered microbial communities in the upper respiratory tract of cigarette smokers
ES Charlson, J Chen, R Custers-Allen, K Bittinger, H Li, R Sinha, J Hwang, ...
PloS one 5 (12), e15216, 2010
2982010
Common variations in BARD1 influence susceptibility to high-risk neuroblastoma
M Capasso, M Devoto, C Hou, S Asgharzadeh, JT Glessner, EF Attiyeh, ...
Nature genetics 41 (6), 718-723, 2009
2922009
A Markov random field model for network-based analysis of genomic data
Z Wei, H Li
Bioinformatics 23 (12), 1537-1544, 2007
2762007
Chromosome 6p22 locus associated with clinically aggressive neuroblastoma
JM Maris, YP Mosse, JP Bradfield, C Hou, S Monni, RH Scott, ...
New England Journal of Medicine 358 (24), 2585-2593, 2008
2742008
Variable selection in nonparametric varying-coefficient models for analysis of repeated measurements
L Wang, H Li, JZ Huang
Journal of the American Statistical Association 103 (484), 1556-1569, 2008
2662008
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Articles 1–20