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Khalid Kunji
Khalid Kunji
Hamad Bin Khalifa University, Qatar Computing Research Institute
Verified email at hbku.edu.qa
Title
Cited by
Cited by
Year
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
173*2019
DeepSol: a deep learning framework for sequence-based protein solubility prediction
S Khurana, R Rawi, K Kunji, GY Chuang, H Bensmail, R Mall
Bioinformatics 34 (15), 2605-2613, 2018
1102018
PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine
R Rawi, R Mall, K Kunji, CH Shen, PD Kwong, GY Chuang
Bioinformatics 34 (7), 1092-1098, 2018
682018
RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes
R Mall, L Cerulo, L Garofano, V Frattini, K Kunji, H Bensmail, TS Sabedot, ...
Nucleic acids research 46 (7), e39-e39, 2018
402018
DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction
A Elbasir, B Moovarkumudalvan, K Kunji, PR Kolatkar, H Bensmail, R Mall
Bioinformatics., 2018
302018
BCrystal: an interpretable sequence-based protein crystallization predictor
A Elbasir, R Mall, K Kunji, R Rawi, Z Islam, GY Chuang, PR Kolatkar, ...
Bioinformatics 36 (5), 1429-1438, 2020
182020
Comparison and assessment of family-and population-based genotype imputation methods in large pedigrees
E Ullah, R Mall, MM Abbas, K Kunji, AQ Nato, H Bensmail, EM Wijsman, ...
Genome research 29 (1), 125-134, 2019
162019
Differential Community Detection in Paired Biological Networks
R Mall, E Ullah, K Kunji, F D'Angelo, H Bensmail, M Ceccarelli
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
122017
An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity
R Mall, E Ullah, K Kunji, M Ceccarelli, H Bensmail
F1000Research 7 (378), 378, 2018
112018
Coevolution analysis of HIV-1 envelope glycoprotein complex
R Rawi, K Kunji, A Haoudi, H Bensmail
PloS one 10 (11), e0143245, 2015
112015
COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator
R Rawi, R Mall, K Kunji, M El Anbari, M Aupetit, E Ullah, H Bensmail
BMC bioinformatics 17 (1), 1-9, 2016
62016
Genetic predisposition to cancer across people of different ancestries in Qatar: a population-based, cohort study
M Saad, Y Mokrab, N Halabi, J Shan, R Razali, K Kunji, N Syed, ...
The Lancet Oncology 23 (3), 341-352, 2022
32022
An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity
R Mall, E Ullah, K Kunji, H Bensmail, M Ceccarelli
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017
32017
Network-based identification of key master regulators associated with an immune-silent cancer phenotype
R Mall, M Saad, J Roelands, D Rinchai, K Kunji, H Almeer, W Hendrickx, ...
Briefings in bioinformatics 22 (6), bbab168, 2021
22021
Whole genome sequencing of a middle eastern cohort replicates known loci for coronary heart disease and identifies potential novel ones
K Kunji, A El-Menyar, E Ullah, I Kullo, M Saad, J Al Suwaidi
Journal of the American College of Cardiology 77 (18_Supplement_1), 13-13, 2021
22021
GIGI-Quick: a fast approach to impute missing genotypes in genome-wide association family data
K Kunji, E Ullah, AQ Nato Jr, EM Wijsman, M Saad
Bioinformatics 34 (9), 1591-1593, 2018
22018
Untargeted Metabolomics Profiling Reveals Perturbations in Arginine-NO Metabolism in Middle Eastern Patients with Coronary Heart Disease
E Ullah, A El-Menyar, K Kunji, R Elsousy, HRB Mokhtar, E Ahmad, ...
Metabolites 12 (6), 517, 2022
12022
Putative Protective Effects Of Caffeine And Its Metabolites On Coronary Heart Disease In The Middle East
E Ullah, K Kunji, A El-Menyar, R Elsousy, M Al-Nesf, A Beotra, ...
Circulation 144 (Suppl_1), A13039-A13039, 2021
2021
Differences In Systemic Fatty Acids Between Coronary Heart Disease Patients And Controls From The Middle East Favors Inflammation
E Ullah, K Kunji, A El-Menyar, R Elsousy, M Al-Nesf, A Beotra, ...
Circulation 144 (Suppl_1), A13041-A13041, 2021
2021
Whole Genome Sequencing Association Study for Coronary Heart Disease in a Middle Eastern Cohort Validates Polygenic Risk Scores and Replicates Known Loci
M Saad, K Kunji, E Ullah, A El-Menyar, IJ Kullo, J Al Suwaidi
Circulation 144 (Suppl_1), A12076-A12076, 2021
2021
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