Dheeraj Prakaash

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Syma KhalidUniversity of OxfordVerified email at bioch.ox.ac.uk
Antreas C. KalliAssociate Professor - University of LeedsVerified email at leeds.ac.uk
Conrado PedebosPostdoctoral Research Associate - Universidade Federal de Ciências da Saúde de Porto AlegreVerified email at ufcspa.edu.br
Graham P. CookUniversity of LeedsVerified email at leeds.ac.uk
Carol V RobinsonProfessor of Chemistry University of OxfordVerified email at chem.ox.ac.uk
Omer DushekProfessor, University of OxfordVerified email at path.ox.ac.uk
Mark S.P. SansomUniversity of OxfordVerified email at bioch.ox.ac.uk
Michael DustinUniversity of OxfordVerified email at kennedy.ox.ac.uk
David ColeHonorary Professor, Cardiff UniversityVerified email at cf.ac.uk
Marco LeporeImmunocore LTDVerified email at immunocore.com
Shabaz MohammedAssociate Professor of Proteomics, University of OxfordVerified email at bioch.ox.ac.uk
Abraham Olusegun OluwoleUniversity of OxfordVerified email at chem.ox.ac.uk
Colin KleanthousUniversity of OxfordVerified email at bioch.ox.ac.uk
Melissa Nicole WebbyOxford UniversityVerified email at bioch.ox.ac.uk
B W HoogenboomUniversity College LondonVerified email at ucl.ac.uk
Patrick George InnsDPhil Student, University of OxfordVerified email at bioch.ox.ac.uk
David B SauerUniversity of Oxford - Centre for Medicines DiscoveryVerified email at cmd.ox.ac.uk

Dheeraj Prakaash

University of Oxford

Verified email at bioch.ox.ac.uk

Computational Biophysics / Biochemistry


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Allosteric activation of T cell antigen receptor signaling by quaternary structure relaxation AL Lanz, G Masi, N Porciello, A Cohnen, D Cipria, D Prakaash, Š Bálint, ... Cell Reports 36 (2), 109375, 2021	32	2021
Lipids mediate supramolecular outer membrane protein assembly in bacteria MN Webby, AO Oluwole, C Pedebos, PG Inns, A Olerinyova, D Prakaash, ... Science Advances 8 (44), eadc9566, 2022	28	2022
Multi-scale simulations of the T cell receptor reveal its lipid interactions, dynamics and the arrangement of its cytoplasmic region D Prakaash, GP Cook, O Acuto, AC Kalli PLOS Computational Biology 17 (7), e1009232, 2021	16	2021
The solute carrier SPNS2 recruits PI (4, 5) P2 to synergistically regulate transport of sphingosine-1-phosphate H Tang, H Li, D Prakaash, C Pedebos, X Qiu, DB Sauer, S Khalid, K Duerr, ... Molecular Cell 83 (15), 2739-2752. e5, 2023	6	2023
Molecular dynamics simulations reveal membrane lipid interactions of the full-length lymphocyte specific kinase Lck D Prakaash, GP Cook, O Acuto, AC Kalli bioRxiv - https://www.biorxiv.org/content/10.1101/2022.05.10.491278v2, 2022	5	2022
Computational microbiology of bacteria: Advancements in molecular dynamics simulations S Khalid, AF Brandner, N Juraschko, KE Newman, C Pedebos, ... Structure, 2023	4	2023
Virtual reality: a railroad for structural bioinformatics towards advanced cancer research D Prakaash, RR Kodagahally, M Honnaiah PeerJ PrePrints 5, e2960v1, 2017	3	2017
Transport and inhibition of the sphingosine-1-phosphate exporter SPNS2 D Sauer, H Li, A Pike, YN Chang, D Prakaash, Z Gelova, J Stanka, ...	1	2023
Molecular Dynamics Simulations and Modelling of the T cell receptor and the Lymphocyte-specific Protein Tyrosine Kinase D Prakaash University of Leeds, 2021	1	2021
Characterization of antimicrobial peptide interactions with a realistically phase separated model of the E. coli outer membrane via large-scale simulations D Prakaash, AB González, F Waterhouse, S Khalid Biophysical Journal 123 (3), 328a, 2024		2024
Spatial organisation of the E. coli outer membrane from multiscale computer simulations S Khalid, D Prakaash, C Pedebos, K Okada Biophysical Journal 122 (3), 228a, 2023		2023
All-Atom Mesoscale Simulations Predict the Conformational Dynamics of Influenza Virus Surface Glycoproteins D Prakaash, S Khalid ACS Central Science 9 (1), 10-13, 2023		2023
Molecular dynamics and lipid interactions of the complete T-cell receptor in a plasma membrane model D Prakaash, GP Cook, O Acuto, AC Kalli EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 50 (SUPPL 1), 186-186, 2021		2021
Molecular Simulations Reveal the Dynamics of the T-Cell Receptor in a T-Cell Model Membrane D Prakaash, O Acuto, G Cook, A Kalli Biophysical Journal 120 (3), 130a, 2021		2021

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