| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 12828 | 2012 |
| A census of human transcription factors: function, expression and evolution JM Vaquerizas, SK Kummerfeld, SA Teichmann, NM Luscombe Nature Reviews Genetics 10 (4), 252-263, 2009 | 1806 | 2009 |
| A user’s guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS Biol 9 (4), e1001046, 2011 | 1398 | 2011 |
| DNA-binding specificities of human transcription factors A Jolma, J Yan, T Whitington, J Toivonen, KR Nitta, P Rastas, ... Cell 152 (1-2), 327-339, 2013 | 1233 | 2013 |
| Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities A Jolma, T Kivioja, J Toivonen, L Cheng, G Wei, M Enge, M Taipale, ... Genome research 20 (6), 861-873, 2010 | 491 | 2010 |
| Chromatin architecture emerges during zygotic genome activation independent of transcription CB Hug, AG Grimaldi, K Kruse, JM Vaquerizas Cell 169 (2), 216-228. e19, 2017 | 405 | 2017 |
| BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments F Al-Shahrour, P Minguez, J Tárraga, D Montaner, E Alloza, ... Nucleic acids research 34 (suppl_2), W472-W476, 2006 | 331 | 2006 |
| BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo Nucleic acids research 33 (suppl_2), W460-W464, 2005 | 310 | 2005 |
| Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly T Ishiuchi, R Enriquez-Gasca, E Mizutani, A Bošković, C Ziegler-Birling, ... Nature structural & molecular biology 22 (9), 662-671, 2015 | 269 | 2015 |
| PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes L Conde, JM Vaquerizas, H Dopazo, L Arbiza, J Reumers, F Rousseau, ... Nucleic acids research 34 (suppl_2), W621-W625, 2006 | 256 | 2006 |
| Nuclear Pore Proteins Nup153 and Megator Define Transcriptionally Active Regions in the Drosophila Genome JM Vaquerizas, R Suyama, J Kind, K Miura, NM Luscombe, A Akhtar PLoS genetics 6 (2), e1000846, 2010 | 255 | 2010 |
| GEPAS: a web-based resource for microarray gene expression data analysis J Herrero, F Al-Shahrour, R Diaz-Uriarte, A Mateos, JM Vaquerizas, ... Nucleic acids research 31 (13), 3461-3467, 2003 | 229 | 2003 |
| Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila J Kind, JM Vaquerizas, P Gebhardt, M Gentzel, NM Luscombe, P Bertone, ... cell 133 (5), 813-828, 2008 | 173 | 2008 |
| The nonspecific lethal complex is a transcriptional regulator in Drosophila SJ Raja, I Charapitsa, T Conrad, JM Vaquerizas, P Gebhardt, H Holz, ... Molecular cell 38 (6), 827-841, 2010 | 161 | 2010 |
| Cell–matrix signals specify bone endothelial cells during developmental osteogenesis UH Langen, ME Pitulescu, JM Kim, R Enriquez-Gasca, KK Sivaraj, ... Nature cell biology 19 (3), 189-201, 2017 | 151 | 2017 |
| Next station in microarray data analysis: GEPAS D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, ... Nucleic Acids Research 34 (suppl_2), W486-W491, 2006 | 148 | 2006 |
| A molecular roadmap for the emergence of early-embryonic-like cells in culture D Rodriguez-Terrones, X Gaume, T Ishiuchi, A Weiss, A Kopp, K Kruse, ... Nature genetics 50 (1), 106-119, 2018 | 124 | 2018 |
| Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets J Reimand, JM Vaquerizas, AE Todd, J Vilo, NM Luscombe Nucleic acids research 38 (14), 4768-4777, 2010 | 122 | 2010 |
| GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data JM Vaquerizas, L Conde, P Yankilevich, A Cabezon, P Minguez, ... Nucleic acids research 33 (suppl_2), W616-W620, 2005 | 121 | 2005 |
| PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level L Conde, JM Vaquerizas, J Santoyo, F Al-Shahrour, S Ruiz-Llorente, ... Nucleic acids research 32 (suppl_2), W242-W248, 2004 | 119 | 2004 |
Nicholas LuscombeOkinawa Institute of Science and Technology Graduate UniversityVerified email at oist.jp
