Juan M Vaquerizas
Juan M Vaquerizas
MRC London Institute of Medical Sciences, Imperial College London
Verified email at - Homepage
Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
A census of human transcription factors: function, expression and evolution
JM Vaquerizas, SK Kummerfeld, SA Teichmann, NM Luscombe
Nature Reviews Genetics 10 (4), 252-263, 2009
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
DNA-binding specificities of human transcription factors
A Jolma, J Yan, T Whitington, J Toivonen, KR Nitta, P Rastas, ...
Cell 152 (1), 327-339, 2013
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
A Jolma, T Kivioja, J Toivonen, L Cheng, G Wei, M Enge, M Taipale, ...
Genome research 20 (6), 861-873, 2010
Chromatin architecture emerges during zygotic genome activation independent of transcription
CB Hug, AG Grimaldi, K Kruse, JM Vaquerizas
Cell 169 (2), 216-228. e19, 2017
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments
F Al-Shahrour, P Minguez, J Tárraga, D Montaner, E Alloza, ...
Nucleic acids research 34 (suppl_2), W472-W476, 2006
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments
F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo
Nucleic acids research 33 (suppl_2), W460-W464, 2005
Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly
T Ishiuchi, R Enriquez-Gasca, E Mizutani, A Bošković, C Ziegler-Birling, ...
Nature structural & molecular biology 22 (9), 662-671, 2015
Nuclear Pore Proteins Nup153 and Megator Define Transcriptionally Active Regions in the Drosophila Genome
JM Vaquerizas, R Suyama, J Kind, K Miura, NM Luscombe, A Akhtar
PLoS genetics 6 (2), e1000846, 2010
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes
L Conde, JM Vaquerizas, H Dopazo, L Arbiza, J Reumers, F Rousseau, ...
Nucleic acids research 34 (suppl_2), W621-W625, 2006
GEPAS: A web-based resource for microarray gene expression data analysis
J Herrero, F Al-Shahrour, R Diaz-Uriarte, A Mateos, JM Vaquerizas, ...
Nucleic acids research 31 (13), 3461-3467, 2003
Cell–matrix signals specify bone endothelial cells during developmental osteogenesis
UH Langen, ME Pitulescu, JM Kim, R Enriquez-Gasca, KK Sivaraj, ...
Nature cell biology 19 (3), 189-201, 2017
Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila
J Kind, JM Vaquerizas, P Gebhardt, M Gentzel, NM Luscombe, P Bertone, ...
cell 133 (5), 813-828, 2008
The nonspecific lethal complex is a transcriptional regulator in Drosophila
SJ Raja, I Charapitsa, T Conrad, JM Vaquerizas, P Gebhardt, H Holz, ...
Molecular cell 38 (6), 827-841, 2010
Next station in microarray data analysis: GEPAS
D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, ...
Nucleic Acids Research 34 (suppl_2), W486-W491, 2006
A molecular roadmap for the emergence of early-embryonic-like cells in culture
D Rodriguez-Terrones, X Gaume, T Ishiuchi, A Weiss, A Kopp, K Kruse, ...
Nature genetics 50 (1), 106-119, 2018
Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
J Reimand, JM Vaquerizas, AE Todd, J Vilo, NM Luscombe
Nucleic acids research 38 (14), 4768-4777, 2010
GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data
JM Vaquerizas, L Conde, P Yankilevich, A Cabezon, P Minguez, ...
Nucleic acids research 33 (suppl_2), W616-W620, 2005
Cohesin disrupts polycomb-dependent chromosome interactions in embryonic stem cells
JDP Rhodes, A Feldmann, B Hernández-Rodríguez, N Díaz, JM Brown, ...
Cell reports 30 (3), 820-835. e10, 2020
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