Bradley R. Jones
Bradley R. Jones
BC Centre for Excellence in HIV/AIDS
Verified email at cfenet.ubc.ca
Title
Cited by
Cited by
Year
ANGES: reconstructing ANcestral GEnomeS maps
BR Jones, A Rajaraman, E Tannier, C Chauve
Bioinformatics 28 (18), 2388-2390, 2012
662012
Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data
LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, ...
Molecular biology and evolution 37 (2), 599-603, 2020
302020
Phylogenetic approach to recover integration dates of latent HIV sequences within-host
BR Jones, NN Kinloch, J Horacsek, B Ganase, M Harris, PR Harrigan, ...
Proceedings of the National Academy of Sciences 115 (38), E8958-E8967, 2018
212018
HIV diversity and genetic compartmentalization in blood and testes during suppressive antiretroviral therapy
RL Miller, R Ponte, BR Jones, NN Kinloch, FH Omondi, MA Jenabian, ...
Journal of virology 93 (17), 2019
82019
node.dating: dating ancestors in phylogenetic trees in R
BR Jones, AFY Poon
Bioinformatics 33 (6), 932-934, 2017
82017
Tree shape‐based approaches for the comparative study of cophylogeny
M Avino, GT Ng, Y He, MS Renaud, BR Jones, AFY Poon
Ecology and evolution 9 (12), 6756-6771, 2019
62019
HIV-1 variants are archived throughout infection and persist in the reservoir
K Brooks, BR Jones, DA Dilernia, DJ Wilkins, DT Claiborne, S McInally, ...
PLoS pathogens 16 (6), e1008378, 2020
52020
Longitudinal within-host evolution of HIV Nef-mediated CD4, HLA and SERINC5 downregulation activity: a case study
H Sudderuddin, NN Kinloch, SW Jin, RL Miller, BR Jones, CJ Brumme, ...
Retrovirology 17 (1), 3, 2020
52020
Genetic complexity in the replication-competent latent HIV reservoir increases with untreated infection duration in infected youth
ZL Brumme, H Sudderuddin, C Ziemniak, K Luzuriaga, BR Jones, JB Joy, ...
Aids 33 (2), 211-218, 2019
52019
The global origins of resistance-associated variants in the non-structural proteins 5A and 5B of the hepatitis C virus
BR Jones, AYM Howe, PR Harrigan, JB Joy
Virus evolution 4 (1), vex041, 2018
42018
Genetic diversity, compartmentalization, and age of HIV proviruses persisting in CD4+ T cell subsets during long-term combination antiretroviral therapy
BR Jones, RL Miller, NN Kinloch, O Tsai, H Rigsby, H Sudderuddin, ...
Journal of virology 94 (5), 2020
32020
Tree hook length formulae, Feynman rules and B-series
BR Jones, K Yeats
arXiv preprint arXiv:1412.6053, 2014
32014
Simulating within host human immunodeficiency virus 1 genome evolution in the persistent reservoir
BR Jones, JB Joy
Virus Evolution, 2020
2020
The latent reservoir as a genetically diverse archive recapitulating within-host HIV evolutionary history
B Jones, N Kinloch, J Horacsek, B Ganase, M Harris, R Harrigan, ...
Journal of Virus Eradication 3, 27, 2017
2017
22 The HIV reservoir as a genetically heterogeneous archive of within-host viral evolution: implications for immunotherapeutic cure strategies
BR Jones, NN Kinloch, J Horacsek, P Mwimanzi, B Baraki, K Cobarrubias, ...
Journal of Virus Eradication 3, 14, 2017
2017
GENERATING TREES: COMPUTING AND GENERATING FUNCTIONS
B JONES
MATH 821-Final Projects December 2010, 91, 2010
2010
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