Jakob Wirbel
Jakob Wirbel
Postdoctoral Fellow, Stanford School of Medicine
Verified email at - Homepage
Cited by
Cited by
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
Extensive transmission of microbes along the gastrointestinal tract
TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ...
eLife 8, e42693, 2019
Unravelling the collateral damage of antibiotics on gut bacteria
L Maier, CV Goemans, J Wirbel, M Kuhn, C Eberl, M Pruteanu, P Müller, ...
Nature 599 (7883), 120-124, 2021
Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
J Wirbel, K Zych, M Essex, N Karcher, E Kartal, G Salazar, P Bork, ...
Genome Biology 22 (1), 1-27, 2021
A faecal microbiota signature with high specificity for pancreatic cancer
E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ...
Gut 71 (7), 1359-1372, 2022
Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO
B Velten, JM Braunger, R Argelaguet, D Arnol, J Wirbel, D Bredikhin, ...
Nature methods 19 (2), 179-186, 2022
Commensal Clostridiales strains mediate effective anti-cancer immune response against solid tumors
A Montalban-Arques, E Katkeviciute, P Busenhart, A Bircher, J Wirbel, ...
Cell Host & Microbe 29 (10), 1573-1588. e7, 2021
Metabolic models predict bacterial passengers in colorectal cancer
DR Garza, R Taddese, J Wirbel, G Zeller, A Boleij, MA Huynen, BE Dutilh
Cancer & metabolism 8, 1-13, 2020
Phosphoproteomics-based profiling of kinase activities in cancer cells
J Wirbel, P Cutillas, J Saez-Rodriguez
Cancer Systems Biology: Methods and Protocols, 103-132, 2018
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ...
Microbiome 10 (1), 1-12, 2022
Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial
SA Sowah, A Milanese, R Schübel, J Wirbel, E Kartal, TS Johnson, ...
Genome Medicine 14 (1), 1-21, 2022
Microbiota-dependent activation of the myeloid calcineurin-NFAT pathway inhibits B7H3-and B7H4-dependent anti-tumor immunity in colorectal cancer
K Peuker, A Strigli, DVF Tauriello, A Hendricks, W von Schönfels, ...
Immunity 55 (4), 701-717. e7, 2022
Depression and fatigue in active IBD from a microbiome perspective—a Bayesian approach to faecal metagenomics
AK Thomann, T Wüstenberg, J Wirbel, LL Knoedler, PA Thomann, ...
BMC medicine 20 (1), 1-17, 2022
Dissecting the collateral damage of antibiotics on gut microbes
L Maier, CV Goemans, M Pruteanu, J Wirbel, M Kuhn, E Cacace, ...
BioRxiv, 2020.01. 09.893560, 2020
SIAMCAT: user-friendly and versatile machine learning workflows for statistically rigorous microbiome analyses
J Wirbel, K Zych, M Essex, N Karcher, E Kartal, G Salazar, P Bork, ...
bioRxiv, 931808, 2020
Prediction of combination therapies based on topological modeling of the immune signaling network in Multiple Sclerosis
M Bernardo-Faura, M Rinas, J Wirbel, I Pertsovskaya, V Pliaka, ...
Genome Medicine 13 (1), 1-16, 2021
C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants
P Ferretti, J Wirbel, OM Maistrenko, T Van Rossum, R Alves, A Fullam, ...
eLife 12, 2023
Intragenic DNA inversions expand bacterial coding capacity
RB Chanin, PT West, RM Park, J Wirbel, GZM Green, AM Miklos, MO Gill, ...
bioRxiv, 2023.03. 11.532203, 2023
Reference genome-independent taxonomic profiling of microbiomes with mOTUs3
HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Metzger, ...
bioRxiv, 2021.04. 20.440600, 2021
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