Nicolas Rapin
Nicolas Rapin
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An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system
N Rapin, O Lund, M Bernaschi, F Castiglione
PloS one 5 (4), e9862, 2010
EZH2 is a potential therapeutic target for H3K27M-mutant pediatric gliomas
F Mohammad, S Weissmann, B Leblanc, DP Pandey, JW Højfeldt, ...
Nature medicine 23 (4), 483-492, 2017
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis
FO Bagger, D Sasivarevic, SH Sohi, LG Laursen, S Pundhir, CK Sønderby, ...
Nucleic acids research 44 (D1), D917-D924, 2016
Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis
KD Rasmussen, G Jia, JV Johansen, MT Pedersen, N Rapin, FO Bagger, ...
Genes & development 29 (9), 910-922, 2015
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization
ND Damas, M Marcatti, C Côme, LL Christensen, MM Nielsen, ...
Nature communications 7 (1), 13875, 2016
Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients
N Rapin, FO Bagger, J Jendholm, H Mora-Jensen, A Krogh, A Kohlmann, ...
Blood, The Journal of the American Society of Hematology 123 (6), 894-904, 2014
BloodSpot: a database of healthy and malignant haematopoiesis updated with purified and single cell mRNA sequencing profiles
FO Bagger, S Kinalis, N Rapin
Nucleic acids research 47 (D1), D881-D885, 2019
Quantitative single-cell proteomics as a tool to characterize cellular hierarchies
EM Schoof, B Furtwängler, N Üresin, N Rapin, S Savickas, C Gentil, ...
Nature communications 12 (1), 3341, 2021
C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic configurations in multipotent progenitors
MS Hasemann, FKB Lauridsen, J Waage, JS Jakobsen, AK Frank, ...
PLoS genetics 10 (1), e1004079, 2014
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18, 1-17, 2017
Leukemogenic nucleophosmin mutation disrupts the transcription factor hub that regulates granulomonocytic fates
X Gu, Q Ebrahem, RZ Mahfouz, M Hasipek, F Enane, T Radivoyevitch, ...
The Journal of clinical investigation 128 (10), 4260-4279, 2018
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis
FO Bagger, N Rapin, K Theilgaard-Mönch, B Kaczkowski, LA Thoren, ...
Nucleic acids research 41 (D1), D1034-D1039, 2013
Temporal mapping of CEBPA and CEBPB binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries
JS Jakobsen, J Waage, N Rapin, HC Bisgaard, FS Larsen, BT Porse
Genome research 23 (4), 592-603, 2013
Initiation of MLL-rearranged AML is dependent on C/EBPα
E Ohlsson, MS Hasemann, A Willer, FKB Lauridsen, N Rapin, J Jendholm, ...
Journal of Experimental Medicine 211 (1), 5-13, 2014
Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies
M Boyd, M Thodberg, M Vitezic, J Bornholdt, K Vitting-Seerup, Y Chen, ...
Nature communications 9 (1), 1661, 2018
Immune system simulation online
N Rapin, O Lund, F Castiglione
Bioinformatics 27 (14), 2013-2014, 2011
ERG promotes the maintenance of hematopoietic stem cells by restricting their differentiation
KJ Knudsen, M Rehn, MS Hasemann, N Rapin, FO Bagger, E Ohlsson, ...
Genes & development 29 (18), 1915-1929, 2015
MHC motif viewer
N Rapin, I Hoof, O Lund, M Nielsen
Immunogenetics 60, 759-765, 2008
ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale
M Halling-Brown, F Pappalardo, N Rapin, P Zhang, D Alemani, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2010
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