Nagarjuna Nagaraj
Nagarjuna Nagaraj
Head of mass spectrometry and proteomics, core facility Max Planck Institute of Biochemistry
Verified email at biochem.mpg.de
Title
Cited by
Cited by
Year
Universal sample preparation method for proteome analysis
JR Wiśniewski, A Zougman, N Nagaraj, M Mann
Nature methods 6 (5), 359-362, 2009
43792009
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
J Cox, MY Hein, CA Luber, I Paron, N Nagaraj, M Mann
Molecular & cellular proteomics 13 (9), 2513-2526, 2014
21452014
Deep proteome and transcriptome mapping of a human cancer cell line
N Nagaraj, JR Wisniewski, T Geiger, J Cox, M Kircher, J Kelso, S Pääbo, ...
Molecular systems biology 7 (1), 548, 2011
8922011
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
NA Kulak, G Pichler, I Paron, N Nagaraj, M Mann
Nature methods 11 (3), 319, 2014
8672014
Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer
A Michalski, E Damoc, JP Hauschild, O Lange, A Wieghaus, A Makarov, ...
Molecular & Cellular Proteomics 10 (9), 2011
7752011
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
J Cox, I Matic, M Hilger, N Nagaraj, M Selbach, JV Olsen, M Mann
Nature protocols 4 (5), 698-705, 2009
7352009
A human interactome in three quantitative dimensions organized by stoichiometries and abundances
MY Hein, NC Hubner, I Poser, J Cox, N Nagaraj, Y Toyoda, IA Gak, ...
Cell 163 (3), 712-723, 2015
6702015
System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap
N Nagaraj, NA Kulak, J Cox, N Neuhauser, K Mayr, O Hoerning, O Vorm, ...
Molecular & Cellular Proteomics 11 (3), 2012
3772012
The coming age of complete, accurate, and ubiquitous proteomes
M Mann, NA Kulak, N Nagaraj, J Cox
Molecular cell 49 (4), 583-590, 2013
3222013
Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology
JR Wiśniewski, N Nagaraj, A Zougman, F Gnad, M Mann
Journal of proteome research 9 (6), 3280-3289, 2010
2402010
Quantitative analysis of the intra-and inter-individual variability of the normal urinary proteome
N Nagaraj, M Mann
Journal of proteome research 10 (2), 637-645, 2011
1842011
Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse
T Geiger, A Velic, B Macek, E Lundberg, C Kampf, N Nagaraj, M Uhlen, ...
Molecular & Cellular Proteomics 12 (6), 1709-1722, 2013
1732013
Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation
N Nagaraj, RCJ D’Souza, J Cox, JV Olsen, M Mann
Journal of proteome research 9 (12), 6786-6794, 2010
1702010
Large-scale phosphosite quantification in tissues by a spike-in SILAC method
M Monetti, N Nagaraj, K Sharma, M Mann
Nature methods 8 (8), 655-658, 2011
1542011
Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways, and transcription factors
AS Deshmukh, M Murgia, N Nagaraj, JT Treebak, J Cox, M Mann
Molecular & Cellular Proteomics 14 (4), 841-853, 2015
1522015
Global proteome turnover analyses of the Yeasts S. cerevisiae and S. pombe
R Christiano, N Nagaraj, F Fröhlich, TC Walther
Cell reports 9 (5), 1959-1965, 2014
1432014
Single muscle fiber proteomics reveals unexpected mitochondrial specialization
M Murgia, N Nagaraj, AS Deshmukh, M Zeiler, P Cancellara, I Moretti, ...
EMBO reports 16 (3), 387-395, 2015
1082015
Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links
M Räschle, G Smeenk, RK Hansen, T Temu, Y Oka, MY Hein, N Nagaraj, ...
Science 348 (6234), 2015
1042015
Cell-type-resolved quantitative proteomics of murine liver
SB Azimifar, N Nagaraj, J Cox, M Mann
Cell metabolism 20 (6), 1076-1087, 2014
1012014
Detergent-based but gel-free method allows identification of several hundred membrane proteins in single LC-MS runs
N Nagaraj, A Lu, M Mann, JR Wisniewski
Journal of proteome research 7 (11), 5028-5032, 2008
852008
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Articles 1–20