Nagarjuna Nagaraj
Nagarjuna Nagaraj
Head of mass spectrometry and proteomics, core facility Max Planck Institute of Biochemistry
Verified email at biochem.mpg.de
TitleCited byYear
Universal sample preparation method for proteome analysis
JR Wiśniewski, A Zougman, N Nagaraj, M Mann
Nature methods 6 (5), 359, 2009
37722009
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
J Cox, MY Hein, CA Luber, I Paron, N Nagaraj, M Mann
Molecular & cellular proteomics 13 (9), 2513-2526, 2014
16332014
Deep proteome and transcriptome mapping of a human cancer cell line
N Nagaraj, JR Wisniewski, T Geiger, J Cox, M Kircher, J Kelso, S Pääbo, ...
Molecular systems biology 7 (1), 2011
8342011
Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer
A Michalski, E Damoc, JP Hauschild, O Lange, A Wieghaus, A Makarov, ...
Molecular & Cellular Proteomics 10 (9), M111. 011015, 2011
7222011
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
NA Kulak, G Pichler, I Paron, N Nagaraj, M Mann
Nature methods 11 (3), 319, 2014
7182014
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
J Cox, I Matic, M Hilger, N Nagaraj, M Selbach, JV Olsen, M Mann
Nature protocols 4 (5), 698, 2009
7042009
A human interactome in three quantitative dimensions organized by stoichiometries and abundances
MY Hein, NC Hubner, I Poser, J Cox, N Nagaraj, Y Toyoda, IA Gak, ...
Cell 163 (3), 712-723, 2015
5262015
System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap
N Nagaraj, NA Kulak, J Cox, N Neuhauser, K Mayr, O Hoerning, O Vorm, ...
Molecular & Cellular Proteomics 11 (3), M111. 013722, 2012
3572012
The coming age of complete, accurate, and ubiquitous proteomes
M Mann, NA Kulak, N Nagaraj, J Cox
Molecular cell 49 (4), 583-590, 2013
3022013
Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology
JR Wiśniewski, N Nagaraj, A Zougman, F Gnad, M Mann
Journal of proteome research 9 (6), 3280-3289, 2010
2292010
Quantitative analysis of the intra-and inter-individual variability of the normal urinary proteome
N Nagaraj, M Mann
Journal of proteome research 10 (2), 637-645, 2011
1772011
Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation
N Nagaraj, RCJ D’Souza, J Cox, JV Olsen, M Mann
Journal of proteome research 9 (12), 6786-6794, 2010
1672010
Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse
T Geiger, A Velic, B Macek, E Lundberg, C Kampf, N Nagaraj, M Uhlen, ...
Molecular & Cellular Proteomics 12 (6), 1709-1722, 2013
1552013
Large-scale phosphosite quantification in tissues by a spike-in SILAC method
M Monetti, N Nagaraj, K Sharma, M Mann
Nature methods 8 (8), 655, 2011
1552011
Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways, and transcription factors
AS Deshmukh, M Murgia, N Nagaraj, JT Treebak, J Cox, M Mann
Molecular & Cellular Proteomics 14 (4), 841-853, 2015
1262015
Global proteome turnover analyses of the Yeasts S. cerevisiae and S. pombe
R Christiano, N Nagaraj, F Fröhlich, TC Walther
Cell reports 9 (5), 1959-1965, 2014
1172014
Single muscle fiber proteomics reveals unexpected mitochondrial specialization
M Murgia, N Nagaraj, AS Deshmukh, M Zeiler, P Cancellara, I Moretti, ...
EMBO reports 16 (3), 387-395, 2015
932015
Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links
M Räschle, G Smeenk, RK Hansen, T Temu, Y Oka, MY Hein, N Nagaraj, ...
Science 348 (6234), 1253671, 2015
892015
Cell-type-resolved quantitative proteomics of murine liver
SB Azimifar, N Nagaraj, J Cox, M Mann
Cell metabolism 20 (6), 1076-1087, 2014
862014
Detergent-based but gel-free method allows identification of several hundred membrane proteins in single LC-MS runs
N Nagaraj, A Lu, M Mann, JR Wiśniewski
Journal of proteome research 7 (11), 5028-5032, 2008
832008
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Articles 1–20