David H. Ardell

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Guy SellaDepartment of Biological Sciences, Columbia UniversityVerified email at columbia.edu
Travis J. LawrenceOak Ridge National LaboratoryVerified email at ucmerced.edu
Siv AnderssonVerified email at icm.uu.se
Arne ElofssonScience for Life Laboratory and department of Biochemistry and Biophysics, Stockholm UniversityVerified email at bioinfo.se
Bodo WinterUniversity of Birmingham, English Language and LinguisticsVerified email at bodowinter.com
Katherine AmrinePostdoc, UC DavisVerified email at ucdavis.edu
Leif A KirsebomVerified email at icm.uu.se
A. Carolin FrankUC MercedVerified email at ucmerced.edu
Scott HandleyWashington University School of MedicineVerified email at pathology.wustl.edu
Björn CanbäckSenior lecturer, Department of Biology, Lund UniversityVerified email at biol.lu.se
Teenie MatlockProfessor Emerita of Cognitive ScienceVerified email at ucmerced.edu
Stephanie HuetteUniversity of MemphisVerified email at memphis.edu
Michael J. SpiveyProfessor of Cognitive Science, University of California, MercedVerified email at ucmerced.edu
Dana BurowGraduate Student, UC MercedVerified email at ucmerced.edu
Michael D. ClearyUniversity of California, MercedVerified email at ucmerced.edu
Ernesto Gonzalez de ValdiviaResearcher at Lund UnversityVerified email at med.lu.se
Eva FreyhultUppsala UniversityVerified email at nbis.se
Wesley SwingleyAssociate Professor in Biological Sciences, Northern Illinois UniversityVerified email at niu.edu
Krister M. SwensonCNRS, LIRMM, Université MontpellierVerified email at lirmm.fr
Dan LarhammarProfessor of Molecular Cell Biology, Uppsala UniversityVerified email at neuro.uu.se

David H. Ardell

Associate Professor, Molecular and Cell Biology / Data Science and Computing / UC Merced

Verified email at ucmerced.edu - Homepage

Code/Language Evolution Reproducible Data Science


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Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007	2256	2007
Structure is three to ten times more conserved than sequence—a study of structural response in protein cores K Illergård, DH Ardell, A Elofsson Proteins: Structure, Function, and Bioinformatics 77 (3), 499-508, 2009	530	2009
The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae CM Alsmark, AC Frank, EO Karlberg, BA Legault, DH Ardell, B Canbäck, ... Proceedings of the National Academy of Sciences 101 (26), 9716-9721, 2004	295	2004
Tentative identification of a resilin gene in Drosophila melanogaster DH Ardell, SO Andersen Insect biochemistry and molecular biology 31 (10), 965-970, 2001	145	2001
On error minimization in a sequential origin of the standard genetic code DH Ardell Journal of molecular evolution 47, 1-13, 1998	127	1998
The coevolution of genes and genetic codes: Crick’s frozen accident revisited G Sella, DH Ardell Journal of molecular evolution 63, 297-313, 2006	83	2006
On the evolution of redundancy in genetic codes DH Ardell, G Sella Journal of molecular evolution 53, 269-281, 2001	83	2001
TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase DH Ardell, SGE Andersson Nucleic acids research 34 (3), 893-904, 2006	72	2006
Eye movements during listening reveal spontaneous grammatical processing S Huette, B Winter, T Matlock, DH Ardell, M Spivey Frontiers in Psychology 5, 410, 2014	67	2014
Dynamic regulation of mRNA decay during neural development DA Burow, MC Umeh-Garcia, MB True, CD Bakhaj, DH Ardell, MD Cleary Neural development 10, 1-16, 2015	65	2015
No accident: genetic codes freeze in error–correcting patterns of the standard genetic code DH Ardell, G Sella Philosophical Transactions of the Royal Society of London. Series B …, 2002	62	2002
Influences on gene expression in vivo by a Shine–Dalgarno sequence H Jin, Q Zhao, EI Gonzalez de Valdivia, DH Ardell, M Stenström, ... Molecular microbiology 60 (2), 480-492, 2006	58	2006
The impact of message mutation on the fitness of a genetic code G Sella, DH Ardell Journal of Molecular Evolution 54, 638-651, 2002	53	2002
TFAM 1.0: an online tRNA function classifier H Tåquist, Y Cui, DH Ardell Nucleic Acids Research 35 (suppl_2), W350-W353, 2007	52	2007
Computational analysis of tRNA identity DH Ardell FEBS letters 584 (2), 325-333, 2010	38	2010
FAST: FAST analysis of sequences toolbox TJ Lawrence, KT Kauffman, KCH Amrine, DL Carper, RS Lee, PJ Becich, ... Frontiers in genetics 6, 172, 2015	36	2015
Three neuropeptide Y receptor genes in the spiny dogfish, Squalus acanthias, support en bloc duplications in early vertebrate evolution E Salaneck, DH Ardell, ET Larson, D Larhammar Molecular biology and evolution 20 (8), 1271-1280, 2003	36	2003
The Genomic Pattern of tDNA Operon Expression in E. coli DH Ardell, LA Kirsebom PLoS Computational Biology 1 (1), e12, 2005	34	2005
Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos E Freyhult, V Moulton, DH Ardell Nucleic acids research 34 (3), 905-916, 2006	33	2006
Polymorphism, Recombination and Alternative Unscrambling in the DNA Polymerase α Gene of the Ciliate Stylonychia lemnae (Alveolata; class Spirotrichea) DH Ardell, CA Lozupone, LF Landweber Genetics 165 (4), 1761-1777, 2003	30	2003

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