Juan A. Ugalde
Juan A. Ugalde
Center for Bioinformatics and Integrative Biology, Universidad Andres Bello
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Cited by
Cited by
GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity
DA Shagin, EV Barsova, YG Yanushevich, AF Fradkov, KA Lukyanov, ...
Molecular biology and evolution 21 (5), 841-850, 2004
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
P Narasingarao, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, ...
The ISME Journal, 2011
Identification of thiotetronic acid antibiotic biosynthetic pathways by target-directed genome mining
X Tang, J Li, N Millán-Aguiñaga, JJ Zhang, EC O’Neill, JA Ugalde, ...
ACS chemical biology 10 (12), 2841-2849, 2015
The gut microbiota of healthy chilean subjects reveals a high abundance of the phylum verrucomicrobia
S Fujio-Vejar, Y Vasquez, P Morales, F Magne, P Vera-Wolf, JA Ugalde, ...
Frontiers in microbiology 8, 1221, 2017
Evolution of coral pigments recreated
JA Ugalde, BSW Chang, MV Matz
Science 305 (5689), 1433, 2004
A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596
D Garrido, S Ruiz-Moyano, N Kirmiz, JC Davis, SM Totten, DG Lemay, ...
Scientific reports 6 (1), 1-18, 2016
Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations
G Levicán, JA Ugalde, N Ehrenfeld, A Maass, P Parada
BMC genomics 9 (1), 1-19, 2008
Assembly-driven community genomics of a hypersaline microbial ecosystem
S Podell, JA Ugalde, P Narasingarao, JF Banfield, KB Heidelberg, ...
PloS one 8 (4), e61692, 2013
Evolution of the indoor biome
NWG on the Evolutionary, LJ Martin, RI Adams, A Bateman, HM Bik, ...
Trends in Ecology & Evolution 30 (4), 223-232, 2015
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community
S Podell, JB Emerson, CM Jones, JA Ugalde, S Welch, KB Heidelberg, ...
The ISME journal 8 (5), 979-990, 2014
Impact of dietary lipids on colonic function and microbiota: an experimental approach involving orlistat-induced fat malabsorption in human volunteers
P Morales, S Fujio, P Navarrete, JA Ugalde, F Magne, C Carrasco-Pozo, ...
Clinical and translational gastroenterology 7 (4), e161, 2016
Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria
JA Ugalde, S Podell, P Narasingarao, EE Allen
Biology direct 6 (1), 1-8, 2011
Microbial biotransformations in the human distal gut
EM Bik, JA Ugalde, J Cousins, AD Goddard, J Richman, ZS Apte
British Journal of Pharmacology 175 (24), 4404-4414, 2018
Genomic data mining of the marine actinobacteria Streptomyces sp. H-KF8 unveils insights into multi-stress related genes and metabolic pathways involved in antimicrobial synthesis
A Undabarrena, JA Ugalde, M Seeger, B Cámara
PeerJ 5, e2912, 2017
Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California Current
JJ Kharbush, JA Ugalde, SL Hogle, EE Allen, LI Aluwihare
Applied and environmental microbiology 79 (23), 7491-7501, 2013
Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins
BSW Chang, JA Ugalde, MV Matz
Methods in enzymology 395, 652-670, 2005
Global genetic cartography of urban metagenomes and anti-microbial resistance
D Danko, D Bezdan, E Afshinnekoo, S Ahsanuddin, C Bhattacharya, ...
BioRxiv, 724526, 2020
Bacterially produced metabolites protect C. elegans neurons from degeneration
A Urrutia, VA García-Angulo, A Fuentes, M Caneo, M Legüe, S Urquiza, ...
PLoS biology 18 (3), e3000638, 2020
Evolution of function and color in GFP‐like proteins
MV Matz, YA Labas, J Ugalde
Green fluorescent protein: properties, applications, and protocols 47, 139-161, 2005
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