Franz Baumdicker
Zitiert von
Zitiert von
panX: pan-genome analysis and exploration
W Ding, F Baumdicker, RA Neher
Nucleic acids research 46 (1), e5-e5, 2018
Efficient ancestry and mutation simulation with msprime 1.0
F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ...
Genetics 220 (3), iyab229, 2022
The infinitely many genes model for the distributed genome of bacteria
F Baumdicker, WR Hess, P Pfaffelhuber
Genome biology and evolution 4 (4), 443-456, 2012
A community-maintained standard library of population genetic models
JR Adrion, CB Cole, N Dukler, JG Galloway, AL Gladstein, G Gower, ...
elife 9, e54967, 2020
The diversity of a distributed genome in bacterial populations
F Baumdicker, WR Hess, P Pfaffelhuber
How to choose sets of ancestry informative markers: A supervised feature selection approach
P Pfaffelhuber, F Grundner-Culemann, V Lipphardt, F Baumdicker
Forensic Science International: Genetics 46, 102259, 2020
The infinitely many genes model with horizontal gene transfer
F Baumdicker, P Pfaffelhuber
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ...
Elife 12, RP84874, 2023
Neural networks for self-adjusting mutation rate estimation when the recombination rate is unknown
KE Burger, P Pfaffelhuber, F Baumdicker
PLOS Computational Biology 18 (8), e1010407, 2022
Inference of recent admixture using genotype data
P Pfaffelhuber, E Sester-Huss, F Baumdicker, J Naue, S Lutz-Bonengel, ...
Forensic Science International: Genetics 56, 102593, 2022
Horizontal gene transfer-mediated bacterial strain variation affects host fitness in Drosophila
Y Wang, F Baumdicker, P Schweiger, S Kuenzel, F Staubach
BMC biology 19, 1-12, 2021
Tackling the pangenome dilemma requires the concerted analysis of multiple population genetic processes
F Baumdicker, A Kupczok
Genome Biology and Evolution 15 (5), evad067, 2023
The independent loss model with ordered insertions for the evolution of CRISPR spacers
F Baumdicker, AMI Huebner, P Pfaffelhuber
Theoretical Population Biology 119, 72-82, 2018
Modifiers of mutation rate in selectively fluctuating environments
F Baumdicker, E Sester-Huss, P Pfaffelhuber
Stochastic Processes and their Applications 130 (11), 6843-6862, 2020
The site frequency spectrum of dispensable genes
F Baumdicker
Theoretical Population Biology 100, 13-25, 2015
Method comparison with repeated measurements—Passing–Bablok regression for grouped data with errors in both variables
F Baumdicker, U Hölker
Statistics & Probability Letters 164, 108801, 2020
Evolution of bacterial genomes under horizontal gene transfer
F Baumdicker, P Pfaffelhuber
arXiv preprint arXiv:1105.5014, 2011
Inferring Ancestry with the Hierarchical Soft Clustering Approach tangleGen
KE Burger, S Klepper, U von Luxburg, F Baumdicker
bioRxiv, 2024.03. 27.586940, 2024
SpacerPlacer: Ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletions
A Fehrenbach, A Mitrofanov, OS Alkhnbashi, R Backofen, F Baumdicker
bioRxiv, 2024.02. 20.581079, 2024
Synthetic Microbial Ecology
T Brüls, F Baumdicker, H Smidt
Frontiers in Microbiology 12, 757848, 2021
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