| panX: pan-genome analysis and exploration W Ding, F Baumdicker, RA Neher Nucleic acids research 46 (1), e5-e5, 2018 | 258 | 2018 |
| Efficient ancestry and mutation simulation with msprime 1.0 F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ... Genetics 220 (3), iyab229, 2022 | 140 | 2022 |
| The infinitely many genes model for the distributed genome of bacteria F Baumdicker, WR Hess, P Pfaffelhuber Genome biology and evolution 4 (4), 443-456, 2012 | 133 | 2012 |
| A community-maintained standard library of population genetic models JR Adrion, CB Cole, N Dukler, JG Galloway, AL Gladstein, G Gower, ... elife 9, e54967, 2020 | 121 | 2020 |
| The diversity of a distributed genome in bacterial populations F Baumdicker, WR Hess, P Pfaffelhuber | 41 | 2010 |
| How to choose sets of ancestry informative markers: A supervised feature selection approach P Pfaffelhuber, F Grundner-Culemann, V Lipphardt, F Baumdicker Forensic Science International: Genetics 46, 102259, 2020 | 25 | 2020 |
| The infinitely many genes model with horizontal gene transfer F Baumdicker, P Pfaffelhuber | 20 | 2014 |
| Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ... Elife 12, RP84874, 2023 | 14 | 2023 |
| Neural networks for self-adjusting mutation rate estimation when the recombination rate is unknown KE Burger, P Pfaffelhuber, F Baumdicker PLOS Computational Biology 18 (8), e1010407, 2022 | 9 | 2022 |
| Inference of recent admixture using genotype data P Pfaffelhuber, E Sester-Huss, F Baumdicker, J Naue, S Lutz-Bonengel, ... Forensic Science International: Genetics 56, 102593, 2022 | 9 | 2022 |
| Horizontal gene transfer-mediated bacterial strain variation affects host fitness in Drosophila Y Wang, F Baumdicker, P Schweiger, S Kuenzel, F Staubach BMC biology 19, 1-12, 2021 | 8 | 2021 |
| Tackling the pangenome dilemma requires the concerted analysis of multiple population genetic processes F Baumdicker, A Kupczok Genome Biology and Evolution 15 (5), evad067, 2023 | 4 | 2023 |
| The independent loss model with ordered insertions for the evolution of CRISPR spacers F Baumdicker, AMI Huebner, P Pfaffelhuber Theoretical Population Biology 119, 72-82, 2018 | 4 | 2018 |
| Modifiers of mutation rate in selectively fluctuating environments F Baumdicker, E Sester-Huss, P Pfaffelhuber Stochastic Processes and their Applications 130 (11), 6843-6862, 2020 | 3 | 2020 |
| The site frequency spectrum of dispensable genes F Baumdicker Theoretical Population Biology 100, 13-25, 2015 | 3 | 2015 |
| Method comparison with repeated measurements—Passing–Bablok regression for grouped data with errors in both variables F Baumdicker, U Hölker Statistics & Probability Letters 164, 108801, 2020 | 2 | 2020 |
| Evolution of bacterial genomes under horizontal gene transfer F Baumdicker, P Pfaffelhuber arXiv preprint arXiv:1105.5014, 2011 | 1 | 2011 |
| Inferring Ancestry with the Hierarchical Soft Clustering Approach tangleGen KE Burger, S Klepper, U von Luxburg, F Baumdicker bioRxiv, 2024.03. 27.586940, 2024 | | 2024 |
| SpacerPlacer: Ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletions A Fehrenbach, A Mitrofanov, OS Alkhnbashi, R Backofen, F Baumdicker bioRxiv, 2024.02. 20.581079, 2024 | | 2024 |
| Synthetic Microbial Ecology T Brüls, F Baumdicker, H Smidt Frontiers in Microbiology 12, 757848, 2021 | | 2021 |
Peter PfaffelhuberAlbert-Ludwigs Universität, FreiburgVerified email at stochastik.uni-freiburg.de
