Fabian J Theis
Fabian J Theis
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Titel
Zitiert von
Zitiert von
Jahr
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
W Sungnak, N Huang, C Bécavin, M Berg, R Queen, M Litvinukova, ...
Nature medicine 26 (5), 681-687, 2020
15282020
SCANPY: large-scale single-cell gene expression data analysis
FA Wolf, P Angerer, FJ Theis
Genome biology 19 (1), 1-5, 2018
13512018
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ...
Cell 181 (5), 1016-1035. e19, 2020
13422020
Science forum: the human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
elife 6, e27041, 2017
10552017
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ...
Nature biotechnology 33 (2), 155-160, 2015
9112015
An atlas of genetic influences on human blood metabolites
SY Shin, EB Fauman, AK Petersen, J Krumsiek, R Santos, J Huang, ...
Nature genetics 46 (6), 543-550, 2014
7782014
Diffusion pseudotime robustly reconstructs lineage branching
L Haghverdi, M Büttner, FA Wolf, F Buettner, FJ Theis
Nature methods 13 (10), 845-848, 2016
6822016
Genome-wide association analyses identify 18 new loci associated with serum urate concentrations
A Köttgen, E Albrecht, A Teumer, V Vitart, J Krumsiek, C Hundertmark, ...
Nature genetics 45 (2), 145-154, 2013
6512013
Current best practices in single‐cell RNA‐seq analysis: a tutorial
MD Luecken, FJ Theis
Molecular systems biology 15 (6), e8746, 2019
5672019
Diffusion maps for high-dimensional single-cell analysis of differentiation data
L Haghverdi, F Buettner, FJ Theis
Bioinformatics 31 (18), 2989-2998, 2015
4402015
Sparse component analysis and blind source separation of underdetermined mixtures
P Georgiev, F Theis, A Cichocki
IEEE Transactions on Neural Networks 16 (4), 993, 2005
4302005
Severe COVID-19 is marked by a dysregulated myeloid cell compartment
J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ...
Cell 182 (6), 1419-1440. e23, 2020
4282020
Deep learning: new computational modelling techniques for genomics
G Eraslan, Ž Avsec, J Gagneur, FJ Theis
Nature Reviews Genetics 20 (7), 389-403, 2019
4212019
Hypergraphs and cellular networks
S Klamt, UU Haus, F Theis
PLoS computational biology 5 (5), e1000385, 2009
4002009
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
FA Wolf, FK Hamey, M Plass, J Solana, JS Dahlin, B Göttgens, ...
Genome biology 20 (1), 1-9, 2019
3842019
Combined single-cell functional and gene expression analysis resolves heterogeneity within stem cell populations
NK Wilson, DG Kent, F Buettner, M Shehata, IC Macaulay, ...
Cell stem cell 16 (6), 712-724, 2015
3672015
Single-cell RNA-seq denoising using a deep count autoencoder
G Eraslan, LM Simon, M Mircea, NS Mueller, FJ Theis
Nature communications 10 (1), 1-14, 2019
3652019
Generalizing RNA velocity to transient cell states through dynamical modeling
V Bergen, M Lange, S Peidli, FA Wolf, FJ Theis
Nature biotechnology 38 (12), 1408-1414, 2020
3642020
Live imaging of astrocyte responses to acute injury reveals selective juxtavascular proliferation
S Bardehle, M Krüger, F Buggenthin, J Schwausch, J Ninkovic, H Clevers, ...
Nature neuroscience 16 (5), 580-586, 2013
3342013
Discovery of sexual dimorphisms in metabolic and genetic biomarkers
K Mittelstrass, JS Ried, Z Yu, J Krumsiek, C Gieger, C Prehn, ...
PLoS genetics 7 (8), e1002215, 2011
3282011
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