| CRISPR-CasΦ from huge phages is a hypercompact genome editor P Pausch, B Al-Shayeb, E Bisom-Rapp, CA Tsuchida, Z Li, BF Cress, ... Science 369 (6501), 333-337, 2020 | 419 | 2020 |
| CasX enzymes comprise a distinct family of RNA-guided genome editors JJ Liu, N Orlova, BL Oakes, E Ma, HB Spinner, KLM Baney, J Chuck, ... Nature 566 (7743), 218-223, 2019 | 419 | 2019 |
| Agricultural Soil Management Practices Differentially Shape the Bacterial and Fungal Microbiomes of Sorghum bicolor HML Wipf, L Xu, C Gao, HB Spinner, J Taylor, P Lemaux, J Mitchell, ... Applied and environmental microbiology 87 (5), e02345-20, 2021 | 18 | 2021 |
| ProteinGym: large-scale benchmarks for protein fitness prediction and design P Notin, A Kollasch, D Ritter, L Van Niekerk, S Paul, H Spinner, N Rollins, ... Advances in Neural Information Processing Systems 36, 2024 | 8 | 2024 |
| Proteingym: Large-scale benchmarks for protein design and fitness prediction P Notin, AW Kollasch, D Ritter, L van Niekerk, S Paul, H Spinner, ... bioRxiv, 2023.12. 07.570727, 2023 | 8 | 2023 |
| Removing bias in sequence models of protein fitness AY Shaw, HB Spinner, S Gurev, JE Shin, N Rollins, DS Marks bioRxiv, 2023.09. 28.560044, 2023 | 3 | 2023 |
| Engineered casx systems B Oakes, S Higgins, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, ... US Patent App. 17/542,219, 2022 | 2 | 2022 |
| Engineered Proteins AM Benjamin Oakes, Sean Higgins, Hannah Spinner, Sarah Denny, Brett T Staahl ... US Patent App. 17/533,997, 2022 | 2* | 2022 |
| Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders. R Orenbuch, AW Kollasch, HD Spinner, CA Shearer, TA Hopf, ... Medrxiv, 2023.11. 27.23299062, 2023 | 1 | 2023 |
| Continuous evolution of user-defined genes at 1-million-times the genomic mutation rate G Rix, RL Williams, H Spinner, VJ Hu, DS Marks, CC Liu bioRxiv, 2023.11. 13.566922, 2023 | 1 | 2023 |
| Compositions and methods for the targeting of sod1 CU Benjamin Oakes, Sean Higgins, Hannah Spinner, Sarah Denny, Brett T Staahl ... US Patent App. 17/483,692, 2022 | 1* | 2022 |
| Particle delivery systems SM Jason Fernandes, Sean Higgins, Isabel Colin, Hannah Spinner, Matthew ... US Patent App. 18/164,138, 2023 | | 2023 |
| Compositions and methods for the targeting of pcsk9 CU Benjamin Oakes, Sean Higgins, Hannah Spinner, Sarah Denny, Brett T Staahl ... US Patent App. 17/791,130, 2023 | | 2023 |
| Guide Scaffolds MA Benjamin Oakes, Sean Higgins, Hannah Spinner, Sarah Denny, Brett T Staahl ... US Patent App. 18/058,251, 2023 | | 2023 |
| Compositions and methods for use in immunotherapy B Oakes, S Higgins, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, ... US Patent App. 17/641,404, 2023 | | 2023 |
| Compositions and methods for the targeting of htt B Oakes, S Higgins, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, ... US Patent App. 17/829,206, 2023 | | 2023 |
| Compositions and methods for the targeting of rhodopsin B Oakes, H Spinner, S Denny, BT Staahl, K Taylor, K Baney, I Colin, ... US Patent App. 17/780,945, 2023 | | 2023 |
| Designing and Evolving Neuron-Specific Proteases H Spinner, C Hemez, J McCreary, DR Liu, DS Marks NeurIPS 2022 Workshop on Learning Meaningful Representations of Life, 2022 | | 2022 |
| Deep mutational evolution of biomolecules B Oakes, S Higgins, H Spinner, K Taylor, S Denny US Patent App. 17/542,238, 2022 | | 2022 |
Benjamin L. OakesScribe TherapeuticsVerified email at berkeley.edu
