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Jason McDermott
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The Genomes of Oryza sativa: A History of Duplications
J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ...
PLoS biology 3 (2), e38, 2005
9762005
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
6982016
Co-expression of CD39 and CD103 identifies tumor-reactive CD8 T cells in human solid tumors
T Duhen, R Duhen, R Montler, J Moses, T Moudgil, NF de Miranda, ...
Nature communications 9 (1), 1-13, 2018
4422018
Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics
DL Diamond, AJ Syder, JM Jacobs, CM Sorensen, KA Walters, SC Proll, ...
PLoS pathogens 6 (1), e1000719, 2010
4222010
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
3292019
Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems
R Samudrala, F Heffron, JE McDermott
PLoS pathogens 5 (4), e1000375, 2009
2272009
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
2242019
Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics
BJM Webb-Robertson, HK Wiberg, MM Matzke, JN Brown, J Wang, ...
Journal of proteome research 14 (5), 1993-2001, 2015
2142015
Impact of dietary resistant starch on the human gut microbiome, metaproteome, and metabolome
TV Maier, M Lucio, LH Lee, NC VerBerkmoes, CJ Brislawn, J Bernhardt, ...
MBio 8 (5), e01343-17, 2017
1852017
Challenges in biomarker discovery: combining expert insights with statistical analysis of complex omics data
JE McDermott, J Wang, H Mitchell, BJ Webb-Robertson, R Hafen, ...
Expert opinion on medical diagnostics 7 (1), 37-51, 2013
1832013
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
1642020
Coordinated Regulation of Virulence during Systemic Infection of Salmonella enterica Serovar Typhimurium
H Yoon, JE McDermott, S Porwollik, M McClelland, F Heffron
PLoS pathogens 5 (2), e1000306, 2009
1462009
Conditional infectivity of a human immunodeficiency virus matrix domain deletion mutant
CT Wang, Y Zhang, J McDermott, E Barklis
Journal of virology 67 (12), 7067-7076, 1993
1321993
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer cell 39 (4), 509-528. e20, 2021
1242021
Discovery of Novel Secreted Virulence Factors from Salmonella enterica Serovar Typhimurium by Proteomic Analysis of Culture Supernatants
GS Niemann, RN Brown, JK Gustin, A Stufkens, AS Shaikh-Kidwai, J Li, ...
Infection and immunity 79 (1), 33-43, 2011
1242011
A systems biology approach to infectious disease research: innovating the pathogen-host research paradigm
A Aderem, JN Adkins, C Ansong, J Galagan, S Kaiser, MJ Korth, GL Law, ...
MBio 2 (1), e00325-10, 2011
1212011
Computational prediction of type III and IV secreted effectors in gram-negative bacteria
JE McDermott, A Corrigan, E Peterson, C Oehmen, G Niemann, ...
Infection and immunity 79 (1), 23-32, 2011
1212011
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy
K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ...
Cell 183 (5), 1436-1456. e31, 2020
1132020
Structural analysis of membrane-bound retrovirus capsid proteins
E Barklis, J McDermott, S Wilkens, E Schabtach, MF Schmid, S Fuller, ...
The EMBO journal 16 (6), 1199-1213, 1997
1051997
Proteome profiling outperforms transcriptome profiling for coexpression based gene function prediction
J Wang, Z Ma, SA Carr, P Mertins, H Zhang, Z Zhang, DW Chan, MJC Ellis, ...
Molecular & Cellular Proteomics 16 (1), 121-134, 2017
1042017
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