| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 827 | 2013 |
| BioInfer: a corpus for information extraction in the biomedical domain S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ... BMC bioinformatics 8 (1), 1-24, 2007 | 494 | 2007 |
| All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski BMC bioinformatics 9 (11), 1-12, 2008 | 340 | 2008 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 300 | 2016 |
| Comparative analysis of five protein-protein interaction corpora S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski BMC bioinformatics 9 (3), 1-11, 2008 | 267 | 2008 |
| Extracting complex biological events with rich graph-based feature sets J Björne, J Heimonen, F Ginter, A Airola, T Pahikkala, T Salakoski Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, 10-18, 2009 | 242 | 2009 |
| Lactobacillus-dominated cervicovaginal microbiota associated with reduced HIV/STI prevalence and genital HIV viral load in African women H Borgdorff, E Tsivtsivadze, R Verhelst, M Marzorati, S Jurriaans, ... The ISME journal 8 (9), 1781-1793, 2014 | 200 | 2014 |
| Complex event extraction at PubMed scale J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski Bioinformatics 26 (12), i382-i390, 2010 | 142 | 2010 |
| Why complicate things? Introducing programming in high school using Python L Grandell, M Peltomäki, RJ Back, T Salakoski Proceedings of the 8th Australasian Conference on Computing Education-Volume …, 2006 | 140 | 2006 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019 | 135 | 2019 |
| Generalizing biomedical event extraction J Björne, T Salakoski Proceedings of BioNLP Shared Task 2011 Workshop, 183-191, 2011 | 135 | 2011 |
| VILLE: a language-independent program visualization tool T Rajala, MJ Laakso, E Kaila, T Salakoski Proceedings of the Seventh Baltic Sea Conference on Computing Education …, 2007 | 129 | 2007 |
| Large-scale event extraction from literature with multi-level gene normalization S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ... PloS one 8 (4), e55814, 2013 | 119 | 2013 |
| Regularized machine learning in the genetic prediction of complex traits S Okser, T Pahikkala, A Airola, T Salakoski, S Ripatti, T Aittokallio PLoS genetics 10 (11), e1004754, 2014 | 118 | 2014 |
| TEES 2.1: Automated annotation scheme learning in the BioNLP 2013 Shared Task J Björne, T Salakoski Proceedings of the BioNLP shared task 2013 workshop, 16-25, 2013 | 118 | 2013 |
| An experimental comparison of cross-validation techniques for estimating the area under the ROC curve A Airola, T Pahikkala, W Waegeman, B De Baets, T Salakoski Computational Statistics & Data Analysis 55 (4), 1828-1844, 2011 | 117 | 2011 |
| A graph kernel for protein-protein interaction extraction A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski Proceedings of the workshop on current trends in biomedical natural language …, 2008 | 114 | 2008 |
| What about a simple language? Analyzing the difficulties in learning to program L Mannila, M Peltomäki, T Salakoski Computer science education 16 (3), 211-227, 2006 | 113 | 2006 |
| Building the essential resources for Finnish: the Turku Dependency Treebank K Haverinen, J Nyblom, T Viljanen, V Laippala, S Kohonen, A Missilä, ... Language Resources and Evaluation 48 (3), 493-531, 2014 | 111 | 2014 |
| Effectiveness of Program Visualization: A Case Study with the ViLLE Tool. T Rajala, MJ Laakso, E Kaila, T Salakoski Journal of Information Technology Education 7, 2008 | 111 | 2008 |
Filip GinterUniversity of TurkuVerified email at utu.fi
