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Philip Hugenholtz
Philip Hugenholtz
Australian Centre for Ecogenomics, SCMB, The University of Queensland
Bestätigte E-Mail-Adresse bei uq.edu.au - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ...
Applied and Environmental Microbiology 72 (7), 5069-5072, 2006
118542006
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson
Genome Research 25 (7), 1043-1055, 2015
86492015
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME Journal 6 (3), 610-618, 2012
53482012
STAMP: statistical analysis of taxonomic and functional profiles
DH Parks, GW Tyson, P Hugenholtz, RG Beiko
Bioinformatics 30 (21), 3123-3124, 2014
36362014
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks
Bioinformatics 36 (6), 1925-1927, 2020
35022020
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
P Hugenholtz, BM Goebel, NR Pace
Journal of Bacteriology 180 (18), 4765-4774, 1998
33351998
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ...
Nature Biotechnology 36 (10), 996-1004, 2018
29032018
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ...
Nature 428 (6978), 37-43, 2004
28672004
Defining the core Arabidopsis thaliana root microbiome
DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ...
Nature 488 (7409), 86-90, 2012
28132012
Insights into the phylogeny and coding potential of microbial dark matter
C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ...
Nature 499 (7459), 431-437, 2013
24212013
Comparative metagenomics of microbial communities
SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ...
Science 308 (5721), 554-557, 2005
20452005
First confirmed detection of SARS-CoV-2 in untreated wastewater in Australia: a proof of concept for the wastewater surveillance of COVID-19 in the community
W Ahmed, N Angel, J Edson, K Bibby, A Bivins, JW O'Brien, PM Choi, ...
Science of the Total Environment 728, 138764, 2020
18392020
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
T Huber, G Faulkner, P Hugenholtz
Bioinformatics 20 (14), 2317-2319, 2004
18162004
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature Biotechnology 35 (8), 725-731, 2017
16842017
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ...
Nature Microbiology 2 (11), 1533-1542, 2017
16312017
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ...
Nature 450 (7169), 560-565, 2007
15462007
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
V Kunin, A Engelbrektson, H Ochman, P Hugenholtz
Environmental Microbiology 12 (1), 118-123, 2010
14952010
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
M Albertsen, P Hugenholtz, A Skarshewski, KL Nielsen, GW Tyson, ...
Nature Biotechnology 31 (6), 533-538, 2013
13682013
The minimum information about a genome sequence (MIGS) specification
D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ...
Nature Biotechnology 26 (5), 541-547, 2008
13652008
Emerging pathogenic links between microbiota and the gut–lung axis
KF Budden, SL Gellatly, DLA Wood, MA Cooper, M Morrison, ...
Nature Reviews Microbiology 15 (1), 55-63, 2017
13182017
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