Philip Hugenholtz

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Koautoren

Gene W. TysonProfessor, Centre for Microbiome Research, Queensland University of TechnologyBestätigte E-Mail-Adresse bei qut.edu.au
Donovan ParksBioinformatic ConsultantBestätigte E-Mail-Adresse bei uq.edu.au
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryBestätigte E-Mail-Adresse bei lbl.gov
Christian RinkeARC Future Fellow, University of QueenslandBestätigte E-Mail-Adresse bei uq.edu.au
Susannah TringeDOE Joint Genome Institute, Lawrence Berkeley National LaboratoryBestätigte E-Mail-Adresse bei lbl.gov
Todd DeSantisCo-founder & Vice President, Informatics, Second Genome, Inc.Bestätigte E-Mail-Adresse bei secondgenome.com
Gary AndersenLawrence Berkeley LaboratoryBestätigte E-Mail-Adresse bei lbl.gov
Eoin BrodieDeputy Division Director, Climate and Ecosystem Sciences, Lawrence Berkeley National LabBestätigte E-Mail-Adresse bei lbl.gov
David W WaiteSenior Scientist, Ministry for Primary IndustriesBestätigte E-Mail-Adresse bei mpi.govt.nz
Tanja WoykeDOE Joint Genome InstituteBestätigte E-Mail-Adresse bei lbl.gov
Alice Carolyn McHardyHelmholtz Centre for Infection ResearchBestätigte E-Mail-Adresse bei helmholtz-hzi.de
Hector Garcia MartinLawrence Berkeley National LaboratoryBestätigte E-Mail-Adresse bei lbl.gov
Michael ImelfortnoneBestätigte E-Mail-Adresse bei uts.edu.au
Pierre-Alain ChaumeilBioinformatician, University of QueenslandBestätigte E-Mail-Adresse bei uq.edu.au
Thomas HuberResearch School of Chemistry, Australian National UniversityBestätigte E-Mail-Adresse bei anu.edu.au
Inka VanwonterghemUniversity of QueenslandBestätigte E-Mail-Adresse bei uq.edu.au
Jan-Fang ChengStaff Scientist, Lawrence Berkeley National LaboratoryBestätigte E-Mail-Adresse bei lbl.gov
Shaomei HeUniversity of Wisconsin-MadisonBestätigte E-Mail-Adresse bei wisc.edu
Yuji SekiguchiNational Institute of Advanced Industrial Science and Technology (AIST)Bestätigte E-Mail-Adresse bei aist.go.jp
Paul DennisThe University of QueenslandBestätigte E-Mail-Adresse bei uq.edu.au

Philip Hugenholtz

Australian Centre for Ecogenomics, SCMB, The University of Queensland

Bestätigte E-Mail-Adresse bei uq.edu.au - Startseite

microbial ecology and evolution


Titel Nach Zitationen sortieren Nach Jahr sortieren Nach Titel sortieren	Zitiert von Zitiert von	Jahr
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ... Applied and environmental microbiology 72 (7), 5069-5072, 2006	8474	2006
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME journal 6 (3), 610-618, 2012	3452	2012
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity P Hugenholtz, BM Goebel, NR Pace Journal of bacteriology 180 (18), 4765-4774, 1998	2927	1998
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson Genome research 25 (7), 1043-1055, 2015	2633	2015
Community structure and metabolism through reconstruction of microbial genomes from the environment GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ... Nature 428 (6978), 37-43, 2004	2378	2004
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments T Huber, G Faulkner, P Hugenholtz Bioinformatics 20 (14), 2317-2319, 2004	1754	2004
Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005	1732	2005
STAMP: statistical analysis of taxonomic and functional profiles DH Parks, GW Tyson, P Hugenholtz, RG Beiko Bioinformatics 30 (21), 3123-3124, 2014	1622	2014
Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012	1618	2012
Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437, 2013	1584	2013
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates V Kunin, A Engelbrektson, H Ochman, P Hugenholtz Environmental microbiology 12 (1), 118-123, 2010	1310	2010
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ... Nature 450 (7169), 560-565, 2007	1297	2007
The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature biotechnology 26 (5), 541-547, 2008	1160	2008
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, ... Nucleic acids research 34 (suppl_2), W394-W399, 2006	1091	2006
Novel division level bacterial diversity in a Yellowstone hot spring P Hugenholtz, C Pitulle, KL Hershberger, NR Pace Journal of bacteriology 180 (2), 366-376, 1998	1054	1998
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes M Albertsen, P Hugenholtz, A Skarshewski, KL Nielsen, GW Tyson, ... Nature biotechnology 31 (6), 533-538, 2013	977	2013
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ... Nature 462 (7276), 1056-1060, 2009	970	2009
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ... Nature biotechnology 36 (10), 996-1004, 2018	911	2018
CRISPR—a widespread system that provides acquired resistance against phages in bacteria and archaea R Sorek, V Kunin, P Hugenholtz Nature Reviews Microbiology 6 (3), 181-186, 2008	891	2008
Microbial diversity in a hydrocarbon-and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation MA Dojka, P Hugenholtz, SK Haack, NR Pace Applied and Environmental Microbiology 64 (10), 3869-3877, 1998	854	1998

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