Zhen Xia
Zhen Xia
PhD of Computational Biomedical Engineering, The University of Texas at Austin
Verified email at
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Polarizable atomic multipole-based AMOEBA force field for proteins
Y Shi, Z Xia, J Zhang, R Best, C Wu, JW Ponder, P Ren
Journal of chemical theory and computation 9 (9), 4046-4063, 2013
QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations
J Yang, C Hu, H Hu, R Yu, Z Xia, X Ye, J Zhu
Bioinformatics 24 (5), 721-723, 2008
Coarse-grained model for simulation of RNA three-dimensional structures
Z Xia, DP Gardner, RR Gutell, P Ren
The Journal of Physical Chemistry B 114 (42), 13497-13506, 2010
RNA 3D structure prediction by using a coarse-grained model and experimental data
Z Xia, DR Bell, Y Shi, P Ren
The Journal of Physical Chemistry B 117 (11), 3135-3144, 2013
Molecular dynamics simulations of Ago silencing complexes reveal a large repertoire of admissible ‘seed-less’ targets
Z Xia, P Clark, T Huynh, P Loher, Y Zhao, HW Chen, I Rigoutsos, R Zhou
Scientific reports 2 (1), 569, 2012
Hydrophobic interaction drives surface-assisted epitaxial assembly of amyloid-like peptides
S Kang, T Huynh, Z Xia, Y Zhang, H Fang, G Wei, R Zhou
Journal of the American Chemical Society 135 (8), 3150-3157, 2013
Collapse of Unfolded Proteins in a Mixture of Denaturants
Z Xia, P Das, EI Shakhnovich, R Zhou
Journal of the American Chemical Society, 2012
UV-radiation induced disruption of dry-cavities in human γD-crystallin results in decreased stability and faster unfolding
Z Xia, Z Yang, T Huynh, JA King, R Zhou
Scientific reports 3 (1), 1560, 2013
Gay-Berne and electrostatic multipole based coarse-grain potential in implicit solvent
J Wu, X Zhen, H Shen, G Li, P Ren
The Journal of chemical physics 135 (15), 2011
Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus
Z Xia, G Jin, J Zhu, R Zhou
Bioinformatics 25 (18), 2309-2317, 2009
Recognition mechanism of siRNA by viral p19 suppressor of RNA silencing: a molecular dynamics study
Z Xia, Z Zhu, J Zhu, R Zhou
Biophysical journal 96 (5), 1761-1769, 2009
Molecular mechanism of surface-assisted epitaxial self-assembly of amyloid-like peptides
S Kang, H Li, T Huynh, F Zhang, Z Xia, Y Zhang, R Zhou
ACS nano 6 (10), 9276-9282, 2012
Free-energy simulations reveal that both hydrophobic and polar interactions are important for influenza hemagglutinin antibody binding
Z Xia, T Huynh, S Kang, R Zhou
Biophysical journal 102 (6), 1453-1461, 2012
A sub-linear, massive-scale look-alike audience extension system a massive-scale look-alike audience extension
Q Ma, M Wen, Z Xia, D Chen
Workshop on Big Data, Streams and Heterogeneous Source Mining: Algorithms …, 2016
The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized)
TY Yoo, A Adhikari, Z Xia, T Huynh, KF Freed, R Zhou, TR Sosnick
Journal of molecular biology 420 (3), 220-234, 2012
The complex and specific pMHC interactions with diverse HIV-1 TCR clonotypes reveal a structural basis for alterations in CTL function
Z Xia, H Chen, S Kang, T Huynh, JW Fang, PA Lamothe, BD Walker, ...
Scientific reports 4 (1), 4087, 2014
Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar
MC Baxa, W Yu, AN Adhikari, L Ge, Z Xia, R Zhou, KF Freed, TR Sosnick
Proceedings of the National Academy of Sciences 112 (27), 8302-8307, 2015
Score look-alike audiences
Q Ma, E Wagh, J Wen, Z Xia, R Ormandi, D Chen
2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW …, 2016
Collapse of a hydrophobic polymer in a mixture of denaturants
P Das, Z Xia, R Zhou
Langmuir 29 (15), 4877-4882, 2013
A Review of Physics-based Coarse-grained Potentials for the Simulations of Protein Structure and Dynamics
H Shen, Z Xia, G Li, P Ren
Annual Reports in Computational Chemistry 8, 129-148, 2012
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