| SignalP 5.0 improves signal peptide predictions using deep neural networks JJ Almagro Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, ... Nature biotechnology 37 (4), 420-423, 2019 | 2682 | 2019 |
| DeepLoc: prediction of protein subcellular localization using deep learning JJ Almagro Armenteros, CK Sønderby, SK Sønderby, H Nielsen, ... Bioinformatics 33 (21), 3387-3395, 2017 | 772 | 2017 |
| Detecting sequence signals in targeting peptides using deep learning JJA Armenteros, M Salvatore, O Emanuelsson, O Winther, G Von Heijne, ... Life science alliance 2 (5), 2019 | 403 | 2019 |
| SignalP 6.0 predicts all five types of signal peptides using protein language models F Teufel, JJ Almagro Armenteros, AR Johansen, MH Gíslason, SI Pihl, ... Nature biotechnology 40 (7), 1023-1025, 2022 | 266 | 2022 |
| An introduction to deep learning on biological sequence data: examples and solutions VI Jurtz, AR Johansen, M Nielsen, JJ Almagro Armenteros, H Nielsen, ... Bioinformatics 33 (22), 3685-3690, 2017 | 142 | 2017 |
| Improved metagenome binning and assembly using deep variational autoencoders JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ... Nature biotechnology 39 (5), 555-560, 2021 | 137* | 2021 |
| DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks J Hallgren, KD Tsirigos, MD Pedersen, JJ Almagro Armenteros, ... BioRxiv, 2022.04. 08.487609, 2022 | 73 | 2022 |
| Modeling of waning immunity after SARS-CoV-2 vaccination and influencing factors L Pérez-Alós, JJA Armenteros, JR Madsen, CB Hansen, I Jarlhelt, ... Nature communications 13 (1), 1614, 2022 | 58 | 2022 |
| DeepLoc 2.0: multi-label subcellular localization prediction using protein language models V Thumuluri, JJ Almagro Armenteros, AR Johansen, H Nielsen, O Winther Nucleic acids research 50 (W1), W228-W234, 2022 | 36 | 2022 |
| Prediction of GPI-anchored proteins with pointer neural networks MH Gíslason, H Nielsen, JJA Armenteros, AR Johansen Current Research in Biotechnology 3, 6-13, 2021 | 28 | 2021 |
| Language modelling for biological sequences–curated datasets and baselines JJ Almagro Armenteros, AR Johansen, O Winther, H Nielsen BioRxiv, 2020.03. 09.983585, 2020 | 12 | 2020 |
| Decline in antibody concentration 6 months after two doses of SARS-CoV-2 BNT162b2 vaccine in solid organ transplant recipients and healthy controls SR Hamm, DL Møller, L Pérez-Alós, CB Hansen, MM Pries-Heje, ... Frontiers in immunology 13, 2022 | 10 | 2022 |
| Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii KH Iversen, LH Rasmussen, K Al-Nakeeb, JJA Armenteros, CS Jensen, ... Scientific Reports 10 (1), 2728, 2020 | 8 | 2020 |
| NetSolP: predicting protein solubility in Escherichia coli using language models V Thumuluri, HM Martiny, JJ Almagro Armenteros, J Salomon, H Nielsen, ... Bioinformatics 38 (4), 941-946, 2022 | 3 | 2022 |
| Deep protein representations enable recombinant protein expression prediction HM Martiny, JJA Armenteros, AR Johansen, J Salomon, H Nielsen Computational Biology and Chemistry 95, 107596, 2021 | 3 | 2021 |
| Antibody responses and risk factors associated with impaired immunological outcomes following two doses of BNT162b2 COVID-19 vaccination in patients with chronic pulmonary diseases ZB Harboe, SR Hamm, L Pérez-Alós, P Sivapalan, H Priemé, T Wilcke, ... BMJ Open Respiratory Research 9 (1), e001268, 2022 | 2 | 2022 |
| Spectrum of protein location in proteomes captures evolutionary relationship between species V Marot-Lassauzaie, T Goldberg, JJA Armenteros, H Nielsen, B Rost Journal of molecular evolution 89 (8), 544-553, 2021 | 2 | 2021 |
| Detecting Novel Sequence Signals in Targeting Peptides Using Deep Learning JJ Almagro Armenteros, M Salvatore, O Emanuelsson, O Winther, ... bioRxiv, 639203, 2019 | 2 | 2019 |
| Temporal patterns of multi-morbidity in 570157 ischemic heart disease patients: a nationwide cohort study AD Haue, JJA Armenteros, PC Holm, R Eriksson, PL Moseley, LV Køber, ... Cardiovascular Diabetology 21 (1), 87, 2022 | 1 | 2022 |
| Waning humoral and cellular immunity after COVID-19 vaccination in patients with psoriasis treated with methotrexate and biologics: a cohort study A Kvist-Hansen, L Pérez-Alós, RF Al-Sofi, LD Heftdal, SR Hamm, ... British Journal of Dermatology, ljad023, 2023 | | 2023 |
Ole WintherBiology, Univ of Copenhagen, Genomic Medicine, Rigshospitalet and Technical University of DenmarkVerified email at bio.ku.dk
