Giovanni Pinamonti
Giovanni Pinamonti
Verified email at fu-berlin.de
Title
Cited by
Cited by
Year
RNA structural dynamics as captured by molecular simulations: a comprehensive overview
J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ...
Chemical reviews 118 (8), 4177-4338, 2018
1752018
Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments
G Pinamonti, S Bottaro, C Micheletti, G Bussi
Nucleic acids research 43 (15), 7260-7269, 2015
352015
Predicting the kinetics of RNA oligonucleotides using Markov state models
G Pinamonti, J Zhao, DE Condon, F Paul, F Noè, DH Turner, G Bussi
Journal of chemical theory and computation 13 (2), 926-934, 2017
232017
Learning effective molecular models from experimental observables
J Chen, J Chen, G Pinamonti, C Clementi
Journal of chemical theory and computation 14 (7), 3849-3858, 2018
212018
Stochastic resonance crossovers in complex networks
G Pinamonti, J Marro, JJ Torres
PloS one 7 (12), e51170, 2012
182012
Barnaba: software for analysis of nucleic acid structures and trajectories
S Bottaro, G Bussi, G Pinamonti, S Reißer, W Boomsma, K Lindorff-Larsen
Rna 25 (2), 219-231, 2019
172019
The mechanism of RNA base fraying: Molecular dynamics simulations analyzed with core-set Markov state models
G Pinamonti, F Paul, F Noé, A Rodriguez, G Bussi
The Journal of chemical physics 150 (15), 154123, 2019
112019
Signal transmission competing with noise in model excitable brains
J Marro, JF Mejias, G Pinamonti, JJ Torres
AIP Conference Proceedings 1510 (1), 85-93, 2013
42013
The Effect of Electrostatic Interactions on the Folding Kinetics of a 3-α-Helical Bundle Protein Family
FM Yrazu, G Pinamonti, C Clementi
The Journal of Physical Chemistry B 122 (49), 11800-11806, 2018
22018
Analyze nucleic acids structures and trajectories with barnaba
S Bottaro, G Bussi, G Pinamonti, S Reisser, W Boomsma, ...
bioRxiv, 345678, 2018
22018
Simulations Reveal Multiple Intermediates in the Unzipping Mechanism of Neuronal SNARE Complex
G Pinamonti, G Campo, J Chen, A Kluber, C Clementi
Biophysical journal 115 (8), 1470-1480, 2018
2018
Studying the dynamical properties of small RNA molecules with computational techniques
G Pinamonti
SISSA, 2016
2016
Studying the kinetic properties of small RNA molecules using Markov state models
G Pinamonti, S Bottaro, F Noe, G Bussi
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
RNA Conformational Fluctuations from Elastic Network Models: A Comparison with Molecular Dynamics and Shape Experiments
G Pinamonti, S Bottaro, C Micheletti, G Bussi
Biophysical Journal 110 (3), 330a, 2016
2016
Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE data
G Pinamonti, S Bottaro, C Micheletti, G Bussi
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44, S171-S171, 2015
2015
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Articles 1–15