| Ilastik: interactive machine learning for (bio) image analysis S Berg, D Kutra, T Kroeger, CN Straehle, BX Kausler, C Haubold, ... Nature Methods 16 (12), 1226-1232, 2019 | 1015 | 2019 |
| ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ... Computer Physics Communications 180 (12), 2499-2512, 2009 | 883 | 2009 |
| ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ... Computer Physics Communications 182 (6), 1384-1385, 2011 | 215 | 2011 |
| Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images A Kreshuk, CN Straehle, C Sommer, U Koethe, M Cantoni, G Knott, ... PloS one 6 (10), e24899, 2011 | 154 | 2011 |
| Multicut brings automated neurite segmentation closer to human performance T Beier, C Pape, N Rahaman, T Prange, S Berg, DD Bock, A Cardona, ... Nature Methods 14 (2), 2017 | 132 | 2017 |
| Accurate and versatile 3D segmentation of plant tissues at cellular resolution A Wolny, L Cerrone, A Vijayan, R Tofanelli, AV Barro, M Louveaux, ... Elife 9, e57613, 2020 | 111 | 2020 |
| Profiling cellular diversity in sponges informs animal cell type and nervous system evolution JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ... Science 374 (6568), 717-723, 2021 | 99 | 2021 |
| Three‐dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues C Calì, J Baghabra, DJ Boges, GR Holst, A Kreshuk, FA Hamprecht, ... Journal of Comparative Neurology 524 (1), 23-38, 2016 | 99 | 2016 |
| Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons B Maco, A Holtmaat, M Cantoni, A Kreshuk, CN Straehle, FA Hamprecht, ... PloS one 8 (2), e57405, 2013 | 83 | 2013 |
| Common limitations of image processing metrics: A picture story A Reinke, MD Tizabi, CH Sudre, M Eisenmann, T Rädsch, M Baumgartner, ... arXiv preprint arXiv:2104.05642, 2021 | 77 | 2021 |
| Deep learning enables fast and dense single-molecule localization with high accuracy A Speiser, LR Müller, P Hoess, U Matti, CJ Obara, WR Legant, A Kreshuk, ... Nature methods 18 (9), 1082-1090, 2021 | 71 | 2021 |
| Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks A Kreshuk, U Koethe, E Pax, DD Bock, FA Hamprecht PLoS ONE, e87351, 2014 | 69 | 2014 |
| Deep learning-enhanced light-field imaging with continuous validation N Wagner, F Beuttenmueller, N Norlin, J Gierten, JC Boffi, J Wittbrodt, ... Nature Methods 18 (5), 557-563, 2021 | 53 | 2021 |
| Whole-body integration of gene expression and single-cell morphology HM Vergara, C Pape, KI Meechan, V Zinchenko, C Genoud, AA Wanner, ... Cell 184 (18), 4819-4837. e22, 2021 | 49 | 2021 |
| Semiautomated correlative 3D electron microscopy of in vivo–imaged axons and dendrites B Maco, M Cantoni, A Holtmaat, A Kreshuk, FA Hamprecht, GW Knott Nature protocols 9 (6), 1354-1366, 2014 | 49 | 2014 |
| Segmenting and Tracking Multiple Dividing Targets Using ilastik C Haubold, M Schiegg, A Kreshuk, S Berg, U Koethe, FA Hamprecht Focus on Bio-Image Informatics, 199-229, 2016 | 44 | 2016 |
| The Mutex Watershed: Efficient, Parameter-Free Image Partitioning S Wolf, C Pape, A Bailoni, N Rahaman, A Kreshuk, U Köthe, ... Proceedings of the European Conference on Computer Vision (ECCV), 546-562, 2018 | 42 | 2018 |
| Automated segmentation of synapses in 3D EM data A Kreshuk, CN Straehle, C Sommer, U Koethe, G Knott, FA Hamprecht Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on …, 2011 | 36 | 2011 |
| The mutex watershed and its objective: Efficient, parameter-free graph partitioning S Wolf, A Bailoni, C Pape, N Rahaman, A Kreshuk, U Köthe, ... IEEE transactions on pattern analysis and machine intelligence 43 (10), 3724 …, 2020 | 35 | 2020 |
| A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule A Vijayan, R Tofanelli, S Strauss, L Cerrone, A Wolny, J Strohmeier, ... Elife 10, e63262, 2021 | 34 | 2021 |
