| Peptides: a package for data mining of antimicrobial peptides. D Osorio, P Rondón-Villarreal, R Torres R Journal 7 (1), 2015 | 321* | 2015 |
| Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA-sequencing data quality control D Osorio, JJ Cai Bioinformatics 37 (7), 963-967, 2021 | 117 | 2021 |
| L-type calcium channels modulation by estradiol NE Vega-Vela, D Osorio, M Avila-Rodriguez, J Gonzalez, ... Molecular Neurobiology 54, 4996-5007, 2017 | 42 | 2017 |
| Single-cell expression variability implies cell function D Osorio, X Yu, Y Zhong, G Li, E Serpedin, JZ Huang, JJ Cai Cells 9 (1), 14, 2019 | 37 | 2019 |
| Single-cell RNA sequencing of a European and an African lymphoblastoid cell line D Osorio, X Yu, P Yu, E Serpedin, JJ Cai Scientific data 6 (1), 112, 2019 | 33 | 2019 |
| scTenifoldNet: a machine learning workflow for constructing and comparing transcriptome-wide gene regulatory networks from single-cell data D Osorio, Y Zhong, G Li, JZ Huang, JJ Cai Patterns 1 (9), 2020 | 28 | 2020 |
| Overdispersed gene expression in schizophrenia G Huang, D Osorio, J Guan, G Ji, JJ Cai npj Schizophrenia 6 (1), 1-9, 2020 | 28* | 2020 |
| Multiple pathways involved in palmitic acid-induced toxicity: A system biology approach D Osorio, A Pinzón, C Martín-Jiménez, GE Barreto, J González Frontiers in Neuroscience 13, 1410, 2020 | 21 | 2020 |
| scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation D Osorio, Y Zhong, G Li, Q Xu, Y Yang, Y Tian, RS Chapkin, JZ Huang, ... Patterns, 100434, 2022 | 20* | 2022 |
| Ablation of long noncoding RNA MALAT1 activates antioxidant pathway and alleviates sepsis in mice J Chen, S Tang, S Ke, JJ Cai, D Osorio, A Golovko, B Morpurgo, S Guo, ... Redox biology 54, 102377, 2022 | 17 | 2022 |
| A single-cell level comparison of human inner ear organoids with the human cochlea and vestibular organs WH van der Valk, ESA van Beelen, MR Steinhart, C Nist-Lund, D Osorio, ... Cell Reports 42 (6), 2023 | 16 | 2023 |
| Regulatory network of PD1 signaling is associated with prognosis in glioblastoma multiforme CM Lopes-Ramos, T Belova, TH Brunner, MB Guebila, D Osorio, ... Cancer Research 81 (21), 5401-5412, 2021 | 15 | 2021 |
| Antecedent presentation of neurological phenotypes in the Collaborative Cross reveals four classes with complex sex-dependencies R Eldridge, D Osorio, K Amstalden, C Edwards, CR Young, JJ Cai, ... Scientific Reports 10 (1), 7918, 2020 | 11 | 2020 |
| rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database D Osorio, ML Kuijjer, JJ Cai Bioinformatics 38 (2), 580-582, 2022 | 10 | 2022 |
| Hyaline cartilage differentiation of fibroblasts in regeneration and regenerative medicine L Yu, YL Lin, M Yan, T Li, EY Wu, K Zimmel, O Qureshi, A Falck, ... Development 149 (2), dev200249, 2022 | 9 | 2022 |
| Single-cell RNA sequencing reveals how the aryl hydrocarbon receptor shapes cellular differentiation potency in the mouse colon Y Yang, D Osorio, LA Davidson, H Han, DA Mullens, A Jayaraman, S Safe, ... Cancer Prevention Research 15 (1), 17-28, 2022 | 8 | 2022 |
| Gag‐like proteins: Novel mediators of prenatal alcohol exposure in neural development MR Pinson, DD Chung, AH Mahnke, NA Salem, D Osorio, V Nair, ... Alcoholism: Clinical and Experimental Research, 2022 | 7 | 2022 |
| Site-specific and substrate-specific control of accurate mRNA editing by a helicase complex in trypanosomes V Kumar, A Ivens, Z Goodall, J Meehan, PK Doharey, A Hillhouse, ... RNA 26 (12), 1862-1881, 2020 | 7 | 2020 |
| Drug combination prioritization for cancer treatment using single-cell RNA-seq based transfer learning D Osorio, DJ McGrail, N Sahni, SS Yi bioRxiv, 2022.04. 06.487357, 2022 | 4 | 2022 |
| scInTime: A Computational Method Leveraging Single-Cell Trajectory and Gene Regulatory Networks to Identify Master Regulators of Cellular Differentiation Q Xu, G Li, D Osorio, Y Zhong, Y Yang, YT Lin, X Zhang, JJ Cai Genes 13 (2), 371, 2022 | 4 | 2022 |
James J CaiProfessor, Texas A&M UniversityVerified email at tamu.edu
