John Reid
John Reid
Alan Turing Institute
Bestätigte E-Mail-Adresse bei turing.ac.uk - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Pseudotime estimation: deconfounding single cell time series
JE Reid, L Wernisch
Bioinformatics 32 (19), 2973-2980, 2016
782016
STEME: efficient EM to find motifs in large data sets
JE Reid, L Wernisch
Nucleic acids research 39 (18), e126-e126, 2011
492011
Nodal cis-regulatory elements reveal epiblast and primitive endoderm heterogeneity in the peri-implantation mouse embryo
C Granier, V Gurchenkov, A Perea-Gomez, A Camus, S Ott, ...
Developmental biology 349 (2), 350-362, 2011
402011
Evolutionarily conserved regulatory motifs in the promoter of the Arabidopsis clock gene LATE ELONGATED HYPOCOTYL
M Spensley, JY Kim, E Picot, J Reid, S Ott, C Helliwell, IA Carré
The Plant Cell 21 (9), 2606-2623, 2009
382009
Variable structure motifs for transcription factor binding sites
JE Reid, KJ Evans, N Dyer, L Wernisch, S Ott
BMC genomics 11 (1), 1-18, 2010
252010
Clusternomics: Integrative context-dependent clustering for heterogeneous datasets
E Gabasova, J Reid, L Wernisch
PLoS computational biology 13 (10), e1005781, 2017
172017
Metabolic regulation of pluripotency and germ cell fate through α‐ketoglutarate
J Tischler, WH Gruhn, J Reid, E Allgeyer, F Buettner, C Marr, F Theis, ...
The EMBO journal 38 (1), e99518, 2019
152019
STEME: a robust, accurate motif finder for large data sets
JE Reid, L Wernisch
PloS one 9 (3), e90735, 2014
122014
An alignment-free model for comparison of regulatory sequences
H Koohy, NP Dyer, JE Reid, G Koentges, S Ott
Bioinformatics 26 (19), 2391-2397, 2010
122010
Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay
D Shigaki, O Adato, AN Adhikari, S Dong, A Hawkins‐Hooker, F Inoue, ...
Human mutation 40 (9), 1280-1291, 2019
92019
GPseudoRank: a permutation sampler for single cell orderings
ME Strauß, JE Reid, L Wernisch
Bioinformatics 35 (4), 611-618, 2019
62019
Transcriptional programs: modelling higher order structure in transcriptional control
JE Reid, S Ott, L Wernisch
BMC bioinformatics 10 (1), 218, 2009
62009
Machine learning based classification of cells into chronological stages using single-cell transcriptomics
SP Singh, S Janjuha, S Chaudhuri, S Reinhardt, A Kränkel, S Dietz, ...
Scientific reports 8 (1), 1-12, 2018
42018
Branch-recombinant Gaussian processes for analysis of perturbations in biological time series
CA Penfold, A Sybirna, JE Reid, Y Huang, L Wernisch, Z Ghahramani, ...
Bioinformatics 34 (17), i1005-i1013, 2018
42018
Nonparametric Bayesian inference of transcriptional branching and recombination identifies regulators of early germ cell development
CA Penfold, A Sybirna, J Reid, Y Huang, L Wernisch, M Grant, ...
bioRxiv, 167684, 2018
42018
Projection layers improve deep learning models of regulatory DNA function
A Hawkins-Hooker, H Kenlay, JE Reid
F1000Research 8 (151), 151, 2019
32019
SCRAM: Spatially Coherent Randomized Attention Maps
DA Calian, P Roelants, J Cali, B Carr, K Dubba, JE Reid, D Zhang
arXiv preprint arXiv:1905.10308, 2019
12019
Not all Mistakes are Equal
M Sensoy, M Saleki, S Julier, R Aydoğan, J Reid
Proceedings of the 19th International Conference on Autonomous Agents and …, 2020
2020
GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution
ME Strauss, PDW Kirk, JE Reid, L Wernisch
Bioinformatics 36 (5), 1484-1491, 2020
2020
GPseudoRank: MCMC for sampling from posterior distributions of pseudo-orderings using Gaussian processes
ME Strauß, JE Reid, L Wernisch
bioRxiv, 211417, 2017
2017
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