| JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ... Nucleic acids research 42 (D1), D142-D147, 2014 | 1168 | 2014 |
| JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ... Nucleic acids research 44 (D1), D110-D115, 2016 | 1107 | 2016 |
| High-throughput in vivo analysis of gene expression in Caenorhabditis elegans R Hunt-Newbury, R Viveiros, R Johnsen, A Mah, D Anastas, L Fang, ... PLoS biology 5 (9), e237, 2007 | 489 | 2007 |
| Gene expression profiling of cells, tissues, and developmental stages of the nematode C. elegans Cold Spring Harb Symp Quant Biol. 68, 159-69, 2003 | 374* | 2003 |
| Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans D Dupuy, N Bertin, CA Hidalgo, K Venkatesan, D Tu, D Lee, J Rosenberg, ... Nature biotechnology 25 (6), 663-668, 2007 | 358 | 2007 |
| oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets AT Kwon, DJ Arenillas, RW Hunt, WW Wasserman G3: Genes| Genomes| Genetics 2 (9), 987-1002, 2012 | 334 | 2012 |
| Large-Scale Screening for Targeted Knockouts in the Caenorhabditis elegans Genome C elegans Deletion Mutant Consortium G3: Genes | Genomes | Genetics 2 (11), 1415-1425, 2012 | 303 | 2012 |
| Identification of ciliary and ciliopathy genes in Caenorhabditis elegansthrough comparative genomics N Chen, A Mah, OE Blacque, J Chu, K Phgora, MW Bakhoum, ... Genome biology 7, 1-12, 2006 | 115 | 2006 |
| Identification of a nematode chemosensory gene family N Chen, S Pai, Z Zhao, A Mah, R Newbury, RC Johnsen, Z Altun, ... Proceedings of the National Academy of Sciences 102 (1), 146-151, 2005 | 81 | 2005 |
| Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets R Worsley Hunt, WW Wasserman Genome biology 15, 1-16, 2014 | 76 | 2014 |
| Identification and analysis of internal promoters in Caenorhabditis elegans operons P Huang, ED Pleasance, JS Maydan, R Hunt-Newbury, NJ O’Neil, A Mah, ... Genome research 17 (10), 1478-1485, 2007 | 60 | 2007 |
| Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment R Worsley Hunt, A Mathelier, L Del Peso, WW Wasserman BMC genomics 15, 1-19, 2014 | 58 | 2014 |
| The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia M Tiana, B Acosta-Iborra, L Puente-Santamaría, P Hernansanz-Agustin, ... Nucleic acids research 46 (1), 120-133, 2018 | 51 | 2018 |
| A conserved noncoding locus regulates random monoallelic Xist expression across a topological boundary R Galupa, EP Nora, R Worsley-Hunt, C Picard, C Gard, JG van Bemmel, ... Molecular cell 77 (2), 352-367. e8, 2020 | 49 | 2020 |
| Identification of cis-regulatory sequence variations in individual genome sequences R Worsley-Hunt, V Bernard, WW Wasserman Genome medicine 3, 1-14, 2011 | 28 | 2011 |
| oPOSSUM‑3: advanced analysis of regulatory Motif over‑representation across genes or ChIP‑Seq datasets. G3 Genes Genom Genet. 2012; 2: 987 AT Kwon, DJ Arenillas, RW Hunt, WW Wasserman | 4 | |
| Improving the detection of transcription factor binding regions CR Hunt University of British Columbia, 2014 | | 2014 |
