Frédéric Mahé
Frédéric Mahé
CIRAD, UMR BGPI, F-34398, Montpellier, France
Verified email at cirad.fr - Homepage
TitleCited byYear
VSEARCH: a versatile open source tool for metagenomics
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
PeerJ 4, e2584, 2016
12402016
Eukaryotic plankton diversity in the sunlit ocean
C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ...
Science 348 (6237), 1261605, 2015
7162015
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
L Guillou, D Bachar, S Audic, D Bass, C Berney, L Bittner, C Boutte, ...
Nucleic acids research 41 (D1), D597-D604, 2012
4122012
Swarm: robust and fast clustering method for amplicon-based studies
F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn
PeerJ 2, e593, 2014
3282014
Patterns of rare and abundant marine microbial eukaryotes
R Logares, S Audic, D Bass, L Bittner, C Boutte, R Christen, JM Claverie, ...
Current Biology 24 (8), 813-821, 2014
2322014
Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing
R Massana, A Gobet, S Audic, D Bass, L Bittner, C Boutte, A Chambouvet, ...
Environmental microbiology 17 (10), 4035-4049, 2015
1772015
Swarm v2: highly-scalable and high-resolution amplicon clustering
F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn
PeerJ 3, e1420, 2015
1482015
VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
1232016
Molecular diversity and distribution of marine fungi across 130 European environmental samples
TA Richards, G Leonard, F Mahé, J del Campo, S Romac, MDM Jones, ...
Proceedings of the Royal Society B: Biological Sciences 282 (1819), 20152243, 2015
742015
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), e00003-15, 2016
692016
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
F Mahé, C de Vargas, D Bass, L Czech, A Stamatakis, E Lara, D Singer, ...
Nature Ecology & Evolution 1 (4), 0091, 2017
662017
Is the distribution of Prochlorococcus and Synechococcus ecotypes in the Mediterranean Sea affected by global warming?
D Mella-Flores, S Mazard, C Jeanthon, EM Bendif, M Ostrowski, ...
Copernicus Publications, 2011
632011
Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context
M Dunthorn, J Otto, SA Berger, A Stamatakis, F Mahé, S Romac, ...
Molecular biology and evolution 31 (4), 993-1009, 2014
612014
Vampires in the oceans: predatory cercozoan amoebae in marine habitats
C Berney, S Romac, F Mahé, S Santini, R Siano, D Bass
The ISME journal 7 (12), 2387, 2013
592013
Molecular phylogeny and morphological evolution of the Acantharia (Radiolaria)
J Decelle, N Suzuki, F Mahé, C de Vargas, F Not
Protist 163 (3), 435-450, 2012
422012
Intracellular diversity of the V4 and V9 regions of the 18S rRNA in marine protists (radiolarians) assessed by high-throughput sequencing
J Decelle, S Romac, E Sasaki, F Not, F Mahe
PLoS One 9 (8), e104297, 2014
412014
Diversity, ecology and biogeochemistry of cyst-forming Acantharia (Radiolaria) in the oceans
J Decelle, P Martin, K Paborstava, DW Pond, G Tarling, F Mahé, ...
PLoS One 8 (1), e53598, 2013
392013
Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
N Le Bescot, F Mahé, S Audic, C Dimier, MJ Garet, J Poulain, P Wincker, ...
Environmental Microbiology 18 (2), 609-626, 2016
382016
Comparing High‐throughput Platforms for Sequencing the V4 Region of SSU‐r DNA in Environmental Microbial Eukaryotic Diversity Surveys
F Mahé, J Mayor, J Bunge, J Chi, T Siemensmeyer, T Stoeck, B Wahl, ...
Journal of Eukaryotic Microbiology 62 (3), 338-345, 2015
382015
Transcriptome divergence between the hexaploid salt‐marsh sister species Spartina maritima and Spartina alterniflora (Poaceae)
H Chelaifa, F Mahé, M Ainouche
Molecular ecology 19 (10), 2050-2063, 2010
352010
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Articles 1–20