|Multiple high-throughput analyses monitor the response of E. coli to perturbations|
N Ishii, K Nakahigashi, T Baba, M Robert, T Soga, A Kanai, T Hirasawa, ...
Science 316 (5824), 593-597, 2007
|Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications|
N Sugiyama, T Masuda, K Shinoda, A Nakamura, M Tomita, Y Ishihama
Molecular & Cellular Proteomics 6 (6), 1103-1109, 2007
|Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis|
T Masuda, M Tomita, Y Ishihama
Journal of proteome research 7 (2), 731-740, 2008
|Characterization of genomic deletion efficiency mediated by clustered regularly interspaced palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells|
MC Canver, DE Bauer, A Dass, YY Yien, J Chung, T Masuda, T Maeda, ...
Journal of Biological Chemistry 289 (31), 21312-21324, 2014
|Transcription factors LRF and BCL11A independently repress expression of fetal hemoglobin|
T Masuda, X Wang, M Maeda, MC Canver, F Sher, APW Funnell, C Fisher, ...
Science 351 (6270), 285-289, 2016
|Unbiased quantitation of Escherichia coli membrane proteome using phase transfer surfactants|
T Masuda, N Saito, M Tomita, Y Ishihama
Molecular & Cellular Proteomics 8 (12), 2770-2777, 2009
|Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol|
KK Cheng, BS Lee, T Masuda, T Ito, K Ikeda, A Hirayama, L Deng, J Dong, ...
Nature communications 5 (1), 1-9, 2014
|Microscale phosphoproteome analysis of 10 000 cells from human cancer cell lines|
T Masuda, N Sugiyama, M Tomita, Y Ishihama
Analytical chemistry 83 (20), 7698-7703, 2011
|Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks|
K Shinoda, M Sugimoto, N Yachie, N Sugiyama, T Masuda, M Robert, ...
Journal of proteome research 5 (12), 3312-3317, 2006
|Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray …|
H Kume, S Muraoka, T Kuga, J Adachi, R Narumi, S Watanabe, ...
Molecular & Cellular Proteomics 13 (6), 1471-1484, 2014
|Genome-wide CRISPR-Cas9 screen identifies leukemia-specific dependence on a pre-mRNA metabolic pathway regulated by DCPS|
T Yamauchi, T Masuda, MC Canver, M Seiler, Y Semba, M Shboul, ...
Cancer Cell 33 (3), 386-400. e5, 2018
|Phosphoproteome analysis of formalin-fixed and paraffin-embedded tissue sections mounted on microscope slides|
M Wakabayashi, H Yoshihara, T Masuda, M Tsukahara, N Sugiyama, ...
Journal of proteome research 13 (2), 915-924, 2014
|Nestin protein is phosphorylated in adult neural stem/progenitor cells and not endothelial progenitor cells|
J Namiki, S Suzuki, T Masuda, Y Ishihama, H Okano
Stem cells international 2012, 2012
|Role of the clathrin adaptor PICALM in normal hematopoiesis and polycythemia vera pathophysiology|
Y Ishikawa, M Maeda, M Pasham, F Aguet, SK Tacheva-Grigorova, ...
Haematologica 100 (4), 439-451, 2015
|Chemical cleavage-assisted tryptic digestion for membrane proteome analysis|
M Iwasaki, T Masuda, M Tomita, Y Ishihama
Journal of Proteome Research 8 (6), 3169-3175, 2009
|In-depth membrane proteomic study of breast cancer tissues for the generation of a chromosome-based protein list|
S Muraoka, H Kume, J Adachi, T Shiromizu, S Watanabe, T Masuda, ...
Journal of proteome research 12 (1), 208-213, 2013
|SIRT7 has a critical role in bone formation by regulating lysine acylation of SP7/Osterix|
M Fukuda, T Yoshizawa, MF Karim, SU Sobuz, W Korogi, D Kobayasi, ...
Nature communications 9 (1), 1-14, 2018
|Nematode-specific tRNAs that decode an alternative genetic code for leucine|
K Hamashima, K Fujishima, T Masuda, J Sugahara, M Tomita, A Kanai
Nucleic acids research 40 (8), 3653-3662, 2012
|A simplified and sensitive method to identify Alzheimer’s disease biomarker candidates using patient-derived induced pluripotent stem cells (iPSCs)|
K Shirotani, K Matsuo, S Ohtsuki, T Masuda, M Asai, Y Kutoku, Y Ohsawa, ...
The Journal of Biochemistry 162 (6), 391-394, 2017
|Cyclization of single-chain Fv antibodies markedly suppressed their characteristic aggregation mediated by inter-chain VH-VL interactions|
S Yamauchi, Y Kobashigawa, N Fukuda, M Teramoto, Y Toyota, C Liu, ...
Molecules 24 (14), 2620, 2019