A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
243 * 2021 Biosynthetic potential of the global ocean microbiome L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ...
Nature 607 (7917), 111-118, 2022
162 2022 GenStore: a high-performance in-storage processing system for genome sequence analysis N Mansouri Ghiasi, J Park, H Mustafa, J Kim, A Olgun, A Gollwitzer, ...
Proceedings of the 27th ACM International Conference on Architectural …, 2022
78 * 2022 Communication-efficient jaccard similarity for high-performance distributed genome comparisons M Besta, R Kanakagiri, H Mustafa, M Karasikov, G Rätsch, T Hoefler, ...
2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2020
74 2020 Metagraph: Indexing and analysing nucleotide archives at petabase-scale M Karasikov, H Mustafa, D Danciu, M Zimmermann, C Barber, G Rätsch, ...
bioRxiv, 2020
46 * 2020 Dynamic compression schemes for graph coloring H Mustafa, I Schilken, M Karasikov, C Eickhoff, G Rätsch, A Kahles
Bioinformatics 35 (3), 407-414, 2019
34 * 2019 AStarix : Fast and Optimal Sequence-to-Graph AlignmentP Ivanov, B Bichsel, H Mustafa, A Kahles, G Rätsch, M Vechev
International Conference on Research in Computational Molecular Biology, 104-119, 2020
25 2020 Detecting Alu insertions from high-throughput sequencing data M David, H Mustafa, M Brudno
Nucleic acids research 41 (17), e169-e169, 2013
23 2013 Sparse binary relation representations for genome graph annotation M Karasikov, H Mustafa, A Joudaki, S Javadzadeh-No, G Rätsch, ...
Research in Computational Molecular Biology: 23rd Annual International …, 2019
19 2019 Lossless indexing with counting de bruijn graphs M Karasikov, H Mustafa, G Rätsch, A Kahles
Genome Research 32 (9), 1754-1764, 2022
16 2022 Sequence-based prediction of permissive stretches for internal protein tagging and knockdown S Oesterle, TM Roberts, LA Widmer, H Mustafa, S Panke, S Billerbeck
BMC biology 15, 1-17, 2017
15 2017 META : Memory-efficient taxonomic classification and abundance estimation for metagenomics with deep learning A Georgiou, V Fortuin, H Mustafa, G Rätsch
arXiv preprint arXiv:1909.13146, 2019
9 * 2019 Topology-based sparsification of graph annotations D Danciu, M Karasikov, H Mustafa, A Kahles, G Rätsch
Bioinformatics 37 (Supplement_1), i169-i176, 2021
6 * 2021 Aligning distant sequences to graphs using long seed sketches A Joudaki, A Meterez, H Mustafa, RG Koerkamp, A Kahles, G Rätsch
Genome Research, gr. 277659.123, 2023
5 2023 Assembly and characterization of novel Alu inserts detected from next-generation sequencing data H Mustafa, M David, M Brudno
Mobile genetic elements 4 (5), 1-7, 2014
4 2014 Label-guided seed-chain-extend alignment on annotated De Bruijn graphs H Mustafa, M Karasikov, N Mansouri Ghiasi, G Rätsch, A Kahles
bioRxiv, 2022.11. 04.514718, 2024
3 * 2024 MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing N Mansouri Ghiasi, M Sadrosadati, H Mustafa, A Gollwitzer, C Firtina, ...
arXiv e-prints, arXiv: 2311.12527, 2023
2023 Microbiomics boosts mining of natural products from the ocean L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ...
2023 Algorithms for efficient sensitive search and sample comparison on petabase-scale genomics data H Mustafa
ETH Zurich, 2022
2022 Model Decarboxylated Schiff base of Asparagine as a Precursor in Carcinogenic Acrylamide Formation FY Gao, A Dodin, H Mustafa, NJ Galant, IG Csizmadia
Journal of Undergraduate Life Sciences• Volume 7 (1), 2013
2013