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Aaron Best
Aaron Best
Harrison C. and Mary L. Visscher Professor of Genetics, Hope College
Verified email at hope.edu - Homepage
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Cited by
Cited by
Year
The RAST Server: rapid annotations using subsystems technology
RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ...
BMC genomics 9 (1), 1-15, 2008
100642008
High-throughput generation, optimization and analysis of genome-scale metabolic models
CS Henry, M DeJongh, AA Best, PM Frybarger, B Linsay, RL Stevens
Nature biotechnology 28 (9), 977-982, 2010
10462010
Genomic minimalism in the early diverging intestinal parasite Giardia lamblia
HG Morrison, AG McArthur, FD Gillin, SB Aley, RD Adam, GJ Olsen, ...
Science 317 (5846), 1921-1926, 2007
8942007
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
6192018
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
WH Pope, CA Bowman, DA Russell, D Jacobs-Sera, DJ Asai, ...
elife 4, e06416, 2015
2432015
Toward the automated generation of genome-scale metabolic networks in the SEED
M DeJongh, K Formsma, P Boillot, J Gould, M Rycenga, A Best
BMC bioinformatics 8 (1), 1-17, 2007
1622007
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution
WH Pope, D Jacobs-Sera, DA Russell, CL Peebles, Z Al-Atrache, ...
PloS one 6 (1), e16329, 2011
1572011
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED
S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry
Systems Metabolic Engineering, 17-45, 2013
1412013
Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia
AA Best, HG Morrison, AG McArthur, ML Sogin, GJ Olsen
Genome Research 14 (8), 1537-1547, 2004
1122004
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
Nucleic acids research 49 (D1), D575-D588, 2021
622021
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
622016
Characterization of gut microbiome dynamics in developing pekin ducks and impact of management system
AA Best, AL Porter, SM Fraley, GS Fraley
Frontiers in microbiology 7, 2125, 2017
512017
Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria
IA Rodionova, X Li, V Thiel, S Stolyar, K Stanton, JK Fredrickson, ...
Frontiers in microbiology 4, 407, 2013
502013
Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence
DA Ravcheev, AA Best, N Tintle, M DeJongh, AL Osterman, PS Novichkov, ...
Journal of bacteriology 193 (13), 3228-3240, 2011
502011
Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria
DA Ravcheev, AA Best, NV Sernova, MD Kazanov, PS Novichkov, ...
BMC genomics 14 (1), 1-14, 2013
472013
Connecting genotype to phenotype in the era of high-throughput sequencing
CS Henry, R Overbeek, F Xia, AA Best, E Glass, J Gilbert, P Larsen, ...
Biochimica et Biophysica Acta (BBA)-General Subjects 1810 (10), 967-977, 2011
432011
Cluster J mycobacteriophages: intron splicing in capsid and tail genes
WH Pope, D Jacobs-Sera, AA Best, GW Broussard, PL Connerly, ...
PloS one 8 (7), e69273, 2013
382013
Diversity and versatility of the Thermotoga maritima sugar kinome
IA Rodionova, C Yang, X Li, OV Kurnasov, AA Best, AL Osterman, ...
Journal of bacteriology 194 (20), 5552-5563, 2012
272012
Similar subunit architecture of archaeal and eukaryal RNA polymerases
AA Best, GJ Olsen
FEMS microbiology letters 195 (1), 85-90, 2001
212001
Gene set analyses for interpreting microarray experiments on prokaryotic organisms
NL Tintle, AA Best, M DeJongh, D Van Bruggen, F Heffron, S Porwollik, ...
BMC bioinformatics 9 (1), 1-14, 2008
192008
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Articles 1–20