Nico Pfeifer
Nico Pfeifer
full Professor @ University of Tübingen & Group leader @ MPI for Informatics
Verified email at mpi-inf.mpg.de - Homepage
Title
Cited by
Cited by
Year
OpenMS–an open-source software framework for mass spectrometry
M Sturm, A Bertsch, C Gröpl, A Hildebrandt, R Hussong, E Lange, ...
BMC bioinformatics 9 (1), 163, 2008
8632008
TOPP—the OpenMS proteomics pipeline
O Kohlbacher, K Reinert, C Gröpl, E Lange, N Pfeifer, O Schulz-Trieglaff, ...
Bioinformatics 23 (2), e191-e197, 2007
3122007
HIV-1 antibody 3BNC117 suppresses viral rebound in humans during treatment interruption
JF Scheid, JA Horwitz, Y Bar-On, EF Kreider, CL Lu, JCC Lorenzi, ...
Nature 535 (7613), 556, 2016
2622016
Antibody 10-1074 suppresses viremia in HIV-1-infected individuals
M Caskey, T Schoofs, H Gruell, A Settler, T Karagounis, EF Kreider, ...
Nature medicine 23 (2), 185, 2017
2212017
HIV-1 therapy with monoclonal antibody 3BNC117 elicits host immune responses against HIV-1
T Schoofs, F Klein, M Braunschweig, EF Kreider, A Feldmann, L Nogueira, ...
Science 352 (6288), 997-1001, 2016
2002016
Combination therapy with anti-HIV-1 antibodies maintains viral suppression
P Mendoza, H Gruell, L Nogueira, JA Pai, AL Butler, K Millard, ...
Nature 561 (7724), 479, 2018
1532018
Widespread impact of HLA restriction on immune control and escape pathways in HIV-1
JM Carlson, J Listgarten, N Pfeifer, V Tan, C Kadie, BD Walker, T Ndung'u, ...
Journal of virology, JVI. 06728-11, 2012
1052012
Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1
JM Carlson, CJ Brumme, E Martin, J Listgarten, MA Brockman, AQ Le, ...
Journal of virology, JVI. 01998-12, 2012
922012
Safety and antiviral activity of combination HIV-1 broadly neutralizing antibodies in viremic individuals
Y Bar-On, H Gruell, T Schoofs, JA Pai, L Nogueira, AL Butler, K Millard, ...
Nature medicine 24 (11), 1701, 2018
902018
A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control
I Bartha, JM Carlson, CJ Brumme, PJ McLaren, ZL Brumme, M John, ...
Elife 2, e01123, 2013
872013
Integrating different data types by regularized unsupervised multiple kernel learning with application to cancer subtype discovery
NK Speicher, N Pfeifer
Bioinformatics 31 (12), i268-i275, 2015
782015
Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics
N Pfeifer, A Leinenbach, CG Huber, O Kohlbacher
BMC bioinformatics 8 (1), 468, 2007
762007
Gradient-based optimization of kernel-target alignment for sequence kernels applied to bacterial gene start detection
C Igel, T Glasmachers, B Mersch, N Pfeifer, P Meinicke
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (2), 216-226, 2007
672007
Impact of pre-adapted HIV transmission
JM Carlson, VY Du, N Pfeifer, A Bansal, VYF Tan, K Power, CJ Brumme, ...
Nature medicine 22 (6), 606-613, 2016
662016
LC-MSsim–a simulation software for liquid chromatography mass spectrometry data
O Schulz-Trieglaff, N Pfeifer, C Gröpl, O Kohlbacher, K Reinert
BMC bioinformatics 9 (1), 423, 2008
632008
CRF19_cpx is an evolutionary fit HIV-1 variant strongly associated with rapid progression to AIDS in Cuba
V Kouri, R Khouri, Y Alemán, Y Abrahantes, J Vercauteren, ...
EBioMedicine 2 (3), 244-254, 2015
532015
Optimal de novo design of MRM experiments for rapid assay development in targeted proteomics
A Bertsch, S Jung, A Zerck, N Pfeifer, S Nahnsen, C Henneges, ...
Journal of proteome research 9 (5), 2696-2704, 2010
402010
Improving peptide identification in proteome analysis by a two-dimensional retention time filtering approach
N Pfeifer, A Leinenbach, CG Huber, O Kohlbacher
Journal of proteome research 8 (8), 4109-4115, 2009
302009
TICO: a tool for improving predictions of prokaryotic translation initiation sites
M Tech, N Pfeifer, B Morgenstern, P Meinicke
Bioinformatics 21 (17), 3568-3569, 2005
292005
Whither systems medicine?
R Apweiler, T Beissbarth, MR Berthold, N Blüthgen, Y Burmeister, ...
Experimental & molecular medicine 50 (3), e453, 2018
262018
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