| ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data O Zagordi, A Bhattacharya, N Eriksson, N Beerenwinkel BMC bioinformatics 12 (1), 1-5, 2011 | 304 | 2011 |
| Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies O Zagordi, R Klein, M Däumer, N Beerenwinkel Nucleic acids research 38 (21), 7400-7409, 2010 | 264 | 2010 |
| Ultra-deep sequencing for the analysis of viral populations N Beerenwinkel, O Zagordi Current opinion in virology 1 (5), 413-418, 2011 | 210 | 2011 |
| Probabilistic inference of viral quasispecies subject to recombination A Töpfer, O Zagordi, S Prabhakaran, V Roth, E Halperin, N Beerenwinkel Journal of Computational Biology 20 (2), 113-123, 2013 | 157* | 2013 |
| Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction O Zagordi, L Geyrhofer, V Roth, N Beerenwinkel Journal of computational biology 17 (3), 417-428, 2010 | 133 | 2010 |
| Glycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the H1N1 influenza viruses RA Medina, S Stertz, B Manicassamy, P Zimmermann, X Sun, RA Albrecht, ... Science translational medicine 5 (187), 187ra70-187ra70, 2013 | 127 | 2013 |
| HIV haplotype inference using a propagating dirichlet process mixture model S Prabhakaran, M Rey, O Zagordi, N Beerenwinkel, V Roth IEEE/ACM transactions on computational biology and bioinformatics 11 (1 …, 2013 | 93 | 2013 |
| Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination F Di Giallonardo, O Zagordi, Y Duport, C Leemann, B Joos, ... PloS one 8 (9), e74249, 2013 | 71 | 2013 |
| Read length versus depth of coverage for viral quasispecies reconstruction O Zagordi, M Däumer, C Beisel, N Beerenwinkel Public Library of Science 7 (10), e47046, 2012 | 65 | 2012 |
| Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias K McElroy, O Zagordi, R Bull, F Luciani, N Beerenwinkel BMC genomics 14, 1-12, 2013 | 61 | 2013 |
| Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection DW Lewandowska, PW Schreiber, MM Schuurmans, B Ruehe, O Zagordi, ... PloS one 12 (5), e0177340, 2017 | 55 | 2017 |
| MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing M Huber, KJ Metzner, FD Geissberger, C Shah, C Leemann, T Klimkait, ... Journal of virological methods 240, 7-13, 2017 | 52 | 2017 |
| Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples DW Lewandowska, O Zagordi, FD Geissberger, V Kufner, S Schmutz, ... Microbiome 5 (1), 1-13, 2017 | 46 | 2017 |
| Viral metagenomics in the clinical realm: lessons learned from a Swiss-wide ring trial T Junier, M Huber, S Schmutz, V Kufner, O Zagordi, S Neuenschwander, ... Genes 10 (9), 655, 2019 | 31 | 2019 |
| Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality D Beauparlant, P Rusert, C Magnus, C Kadelka, J Weber, T Uhr, ... PLoS pathogens 13 (3), e1006255, 2017 | 30 | 2017 |
| HIV-haplotype inference using a constraint-based dirichlet process mixture model S Prabhakaran, M Rey, O Zagordi, N Beerenwinkel, V Roth Machine Learning in Computational Biology (MLCB) NIPS Workshop, 1-4, 2010 | 30 | 2010 |
| Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains DW Lewandowska, O Zagordi, A Zbinden, MM Schuurmans, P Schreiber, ... Diagnostic microbiology and infectious disease 83 (2), 133-138, 2015 | 29 | 2015 |
| High-throughput sequencing of human immunoglobulin variable regions with subtype identification M Schanz, T Liechti, O Zagordi, E Miho, ST Reddy, HF Günthard, A Trkola, ... PloS one 9 (11), e111726, 2014 | 27 | 2014 |
| Profiling host ANP32A splicing landscapes to predict influenza A virus polymerase adaptation P Domingues, D Eletto, C Magnus, HL Turkington, S Schmutz, O Zagordi, ... Nature communications 10 (1), 3396, 2019 | 26 | 2019 |
| Ultradeep pyrosequencing of hepatitis C virus hypervariable region 1 in quasispecies analysis K Caraballo Cortés, O Zagordi, T Laskus, R Płoski, I Bukowska-Ośko, ... BioMed Research International 2013, 2013 | 20 | 2013 |
Niko BeerenwinkelProfessor of Computational Biology, ETH ZurichVerified email at bsse.ethz.ch
