Nagiza Samatova
TitleCited byYear
Detecting differential and correlated protein expression in label-free shotgun proteomics
B Zhang, NC VerBerkmoes, MA Langston, E Uberbacher, RL Hettich, ...
Journal of proteome research 5 (11), 2909-2918, 2006
4332006
Gene network shaping of inherent noise spectra
DW Austin, MS Allen, JM McCollum, RD Dar, JR Wilgus, GS Sayler, ...
Nature 439 (7076), 608-611, 2006
3332006
Impact of pretreated switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis
B Raman, C Pan, GB Hurst, M Rodriguez Jr, CK McKeown, PK Lankford, ...
PloS one 4 (4), 2009
2292009
The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior
JM McCollum, GD Peterson, CD Cox, ML Simpson, NF Samatova
Computational biology and chemistry 30 (1), 39-49, 2006
2062006
Anomaly detection in dynamic networks: a survey
S Ranshous, S Shen, D Koutra, S Harenberg, C Faloutsos, NF Samatova
Wiley Interdisciplinary Reviews: Computational Statistics 7 (3), 223-247, 2015
1772015
Compressing the incompressible with ISABELA: In-situ reduction of spatio-temporal data
S Lakshminarasimhan, N Shah, S Ethier, S Klasky, R Latham, R Ross, ...
European Conference on Parallel Processing, 366-379, 2011
1552011
Community detection in large‐scale networks: a survey and empirical evaluation
S Harenberg, G Bello, L Gjeltema, S Ranshous, J Harlalka, R Seay, ...
Wiley Interdisciplinary Reviews: Computational Statistics 6 (6), 426-439, 2014
1542014
From pull-down data to protein interaction networks and complexes with biological relevance
B Zhang, BH Park, T Karpinets, NF Samatova
Bioinformatics 24 (7), 979-986, 2008
1502008
Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks
Q Liu, J Logan, Y Tian, H Abbasi, N Podhorszki, JY Choi, S Klasky, ...
Concurrency and Computation: Practice and Experience 26 (7), 1453-1473, 2014
1472014
A scalable, parallel algorithm for maximal clique enumeration
MC Schmidt, NF Samatova, K Thomas, BH Park
Journal of Parallel and Distributed Computing 69 (4), 417-428, 2009
1362009
Theory-guided data science: A new paradigm for scientific discovery from data
A Karpatne, G Atluri, JH Faghmous, M Steinbach, A Banerjee, A Ganguly, ...
IEEE Transactions on Knowledge and Data Engineering 29 (10), 2318-2331, 2017
1142017
Efficient data access for parallel BLAST
H Lin, X Ma, P Chandramohan, A Geist, N Samatova
19th IEEE International Parallel and Distributed Processing Symposium, 10 pp., 2005
1092005
Compressed ion temperature gradient turbulence in diverted tokamak edge
CS Chang, S Ku, PH Diamond, Z Lin, S Parker, TS Hahm, N Samatova
Physics of Plasmas 16 (5), 056108, 2009
1052009
ProRata: a quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation
C Pan, G Kora, WH McDonald, DL Tabb, NC VerBerkmoes, GB Hurst, ...
Analytical chemistry 78 (20), 7121-7131, 2006
1052006
System for gathering and summarizing internet information
TE Potok, MT Elmore, JW Reed, JN Treadwell, NF Samatova
US Patent 7,072,883, 2006
86*2006
Improved genome annotation for Zymomonas mobilis
S Yang, KM Pappas, LJ Hauser, ML Land, GL Chen, GB Hurst, C Pan, ...
Nature biotechnology 27 (10), 893-894, 2009
852009
RACHET: an efficient cover-based merging of clustering hierarchies from distributed datasets
NF Samatova, G Ostrouchov, A Geist, AV Melechko
Distributed and Parallel Databases 11 (2), 157-180, 2002
822002
Genome-scale computational approaches to memory-intensive applications in systems biology
Y Zhang, FN Abu-Khzam, NE Baldwin, EJ Chesler, MA Langston, ...
SC'05: Proceedings of the 2005 ACM/IEEE Conference on Supercomputing, 12-12, 2005
812005
ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data
S Lakshminarasimhan, J Jenkins, I Arkatkar, Z Gong, H Kolla, SH Ku, ...
Proceedings of 2011 International Conference for High Performance Computing …, 2011
802011
Community-based anomaly detection in evolutionary networks
Z Chen, W Hendrix, NF Samatova
Journal of Intelligent Information Systems 39 (1), 59-85, 2012
792012
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Articles 1–20