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Saliya Ekanayake, Ph.D.
Saliya Ekanayake, Ph.D.
Senior Software Engineer, Microsoft
Verified email at microsoft.com - Homepage
Title
Cited by
Cited by
Year
Hybrid cloud and cluster computing paradigms for life science applications
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, H Li, B Zhang, ...
BMC bioinformatics 11, 1-6, 2010
1022010
Big data, simulations and HPC convergence
G Fox, J Qiu, S Jha, S Ekanayake, S Kamburugamuve
Big Data Benchmarking: 6th International Workshop, WBDB 2015, Toronto, ON …, 2016
802016
Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink
S Kamburugamuve, P Wickramasinghe, S Ekanayake, GC Fox
The International Journal of High Performance Computing Applications 32 (1 …, 2018
502018
Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering
GL House, S Ekanayake, Y Ruan, UME Schütte, W Kaonongbua, G Fox, ...
Applied and Environmental Microbiology 82 (16), 4921-4930, 2016
392016
Towards high performance processing of streaming data in large data centers
S Kamburugamuve, S Ekanayake, M Pathirage, G Fox
2016 IEEE International Parallel and Distributed Processing Symposium …, 2016
322016
Spidal java: High performance data analytics with java and mpi on large multicore hpc clusters
S Ekanayake, S Kamburugamuve, GC Fox
Proceedings of the 24th High Performance Computing Symposium, 1-8, 2016
292016
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences
Y Ruan, S Ekanayake, M Rho, H Tang, SH Bae, J Qiu, G Fox
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
292012
Generative modeling of human behavior and social interactions using abductive analysis
Y Ren, V Cedeno-Mieles, Z Hu, X Deng, A Adiga, C Barrett, S Ekanayake, ...
2018 IEEE/ACM International Conference on Advances in Social Networks …, 2018
252018
Distributed many-to-many protein sequence alignment using sparse matrices
O Selvitopi, S Ekanayake, G Guidi, GA Pavlopoulos, A Azad, A Buluç
SC20: International Conference for High Performance Computing, Networking …, 2020
242020
Data intensive computing for bioinformatics
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, Y Ruan, ...
Data Intensive Distributed Computing: Challenges and Solutions for Large …, 2012
242012
Java thread and process performance for parallel machine learning on multicore hpc clusters
S Ekanayake, S Kamburugamuve, P Wickramasinghe, GC Fox
2016 IEEE international conference on big data (Big Data), 347-354, 2016
222016
Integration of clustering and multidimensional scaling to determine phylogenetic trees as spherical phylograms visualized in 3 dimensions
Y Ruan, GL House, S Ekanayake, U Schütte, JD Bever, H Tang, G Fox
2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014
222014
Performance of windows multicore systems on threading and mpi
J Qiu, S Beason, SH Bae, S Ekanayake, G Fox
2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid …, 2010
222010
Networked experiments and modeling for producing collective identity in a group of human subjects using an iterative abduction framework
V Cedeno-Mieles, Z Hu, Y Ren, X Deng, A Adiga, C Barrett, N Contractor, ...
Social Network Analysis and Mining 10, 1-43, 2020
202020
The parallelism motifs of genomic data analysis
K Yelick, A Buluç, M Awan, A Azad, B Brock, R Egan, S Ekanayake, ...
Philosophical Transactions of the Royal Society A 378 (2166), 20190394, 2020
202020
The matrix: An agent-based modeling framework for data intensive simulations
P Bhattacharya, S Ekanayake, CJ Kuhlman, C Lebiere, D Morrison, ...
Proceedings of the 18th International Conference on Autonomous Agents and …, 2019
142019
Visualizing the protein sequence universe
L Stanberry, R Higdon, W Haynes, N Kolker, W Broomall, S Ekanayake, ...
Proceedings of the 3rd international workshop on Emerging computational …, 2012
142012
Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets
A Hughes, Y Ruan, S Ekanayake, SH Bae, Q Dong, M Rho, J Qiu, G Fox
BMC bioinformatics 13, 1-6, 2012
122012
Mechanistic and data-driven agent-based models to explain human behavior in online networked group anagram games
V Cedeno-Mieles, Z Hu, X Deng, Y Ren, A Adiga, C Barrett, S Ekanayake, ...
Proceedings of the 2019 IEEE/ACM International Conference on Advances in …, 2019
92019
Pipelines and their compositions for modeling and analysis of controlled online networked social science experiments
V Cedeno-Mieles, Y Ren, S Ekanayake, BJ Goode, CJ Kuhlman, D Machi, ...
2018 Winter Simulation Conference (WSC), 774-785, 2018
82018
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