Raffaello Potestio
Raffaello Potestio
Department of Physics, University of Trento
Verified email at unitn.it - Homepage
Title
Cited by
Cited by
Year
Hamiltonian adaptive resolution simulation for molecular liquids
R Potestio, S Fritsch, P Espanol, R Delgado-Buscalioni, K Kremer, ...
Physical Review Letter 110 (10), 108301, 2013
1352013
Corresponding functional dynamics across the Hsp90 Chaperone family: insights from a multiscale analysis of MD simulations
G Morra, R Potestio, C Micheletti, G Colombo
PLoS Comput Biol 8 (3), e1002433, 2012
802012
Coarse-grained description of protein internal dynamics: an optimal strategy for decomposing proteins in rigid subunits
R Potestio, F Pontiggia, C Micheletti
Biophysical journal 96 (12), 4993-5002, 2009
782009
Computer simulations of soft matter: Linking the scales
R Potestio, C Peter, K Kremer
Entropy 16 (8), 4199-4245, 2014
712014
Monte Carlo adaptive resolution simulation of multicomponent molecular liquids
R Potestio, P Espanol, R Delgado-Buscalioni, R Everaers, K Kremer, ...
Physical review letters 111 (6), 060601, 2013
712013
Knotted vs. unknotted proteins: evidence of knot-promoting loops
R Potestio, C Micheletti, H Orland
PLoS Comput Biol 6 (7), e1000864, 2010
682010
Nuclear quantum effects in water: A multiscale study
S Fritsch, R Potestio, D Donadio, K Kremer
Journal of chemical theory and computation 10 (2), 816-824, 2014
502014
Adaptive resolution simulation of a biomolecule and its hydration shell: Structural and dynamical properties
AC Fogarty, R Potestio, K Kremer
The Journal of Chemical Physics 142 (19), 05B610_1, 2015
472015
PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains
T Aleksiev, R Potestio, F Pontiggia, S Cozzini, C Micheletti
Bioinformatics 25 (20), 2743-2744, 2009
452009
Statistical mechanics of Hamiltonian adaptive resolution simulations
P Español, R Delgado-Buscalioni, R Everaers, R Potestio, D Donadio, ...
The Journal of chemical physics 142 (6), 02B606_1, 2015
432015
Advantages and challenges in coupling an ideal gas to atomistic models in adaptive resolution simulations
K Kreis, AC Fogarty, K Kremer, R Potestio
The European Physical Journal Special Topics 224 (12), 2289-2304, 2015
382015
Quantum locality and equilibrium properties in low-temperature parahydrogen: A multiscale simulation study
R Potestio, L Delle Site
The Journal of chemical physics 136 (5), 054101, 2012
362012
Communication: Kirkwood-Buff integrals in the thermodynamic limit from small-sized molecular dynamics simulations
R Cortes-Huerto, K Kremer, R Potestio
The Journal of Chemical Physics 145 (14), 141103, 2016
342016
Random matrix approach to collective behavior and bulk universality in protein dynamics
R Potestio, F Caccioli, P Vivo
Physical review letters 103 (26), 268101, 2009
332009
ALADYN: a web server for aligning proteins by matching their large-scale motion
R Potestio, T Aleksiev, F Pontiggia, S Cozzini, C Micheletti
Nucleic acids research 38 (suppl_2), W41-W45, 2010
322010
Toward Hamiltonian adaptive QM/MM: Accurate solvent structures using many-body potentials
JM Boereboom, R Potestio, D Donadio, RE Bulo
Journal of chemical theory and computation 12 (8), 3441-3448, 2016
302016
Mechanical and Assembly Units of Viral Capsids Identified via Quasi-Rigid Domain Decomposition
G Polles, G Indelicato, R Potestio, P Cermelli, R Twarock, C Micheletti
PLoS Computational Biology 9 (11), 2013
292013
A multi‐resolution model to capture both global fluctuations of an enzyme and molecular recognition in the ligand‐binding site
AC Fogarty, R Potestio, K Kremer
Proteins: Structure, Function, and Bioinformatics 84 (12), 1902-1913, 2016
272016
A unified framework for force-based and energy-based adaptive resolution simulations
K Kreis, D Donadio, K Kremer, R Potestio
EPL (Europhysics Letters) 108 (3), 30007, 2014
242014
Adaptive resolution simulations with self-adjusting high-resolution regions
K Kreis, R Potestio, K Kremer, AC Fogarty
Journal of chemical theory and computation 12 (8), 4067-4081, 2016
232016
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