| The human gut virome is highly diverse, stable, and individual specific AN Shkoporov, AG Clooney, TDS Sutton, FJ Ryan, KM Daly, JA Nolan, ... Cell host & microbe 26 (4), 527-541. e5, 2019 | 499 | 2019 |
| Whole-virome analysis sheds light on viral dark matter in inflammatory bowel disease AG Clooney, TDS Sutton, AN Shkoporov, RK Holohan, KM Daly, ... Cell host & microbe 26 (6), 764-778. e5, 2019 | 321 | 2019 |
| 16S rRNA gene sequencing of mock microbial populations-impact of DNA extraction method, primer choice and sequencing platform F Fouhy, AG Clooney, C Stanton, MJ Claesson, PD Cotter BMC microbiology 16, 1-13, 2016 | 312 | 2016 |
| Comparing apples and oranges?: next generation sequencing and its impact on microbiome analysis AG Clooney, F Fouhy, RD Sleator, A O’Driscoll, C Stanton, PD Cotter, ... PloS one 11 (2), e0148028, 2016 | 290 | 2016 |
| Biology and taxonomy of crAss-like bacteriophages, the most abundant virus in the human gut E Guerin, A Shkoporov, SR Stockdale, AG Clooney, FJ Ryan, TDS Sutton, ... Cell host & microbe 24 (5), 653-664. e6, 2018 | 252 | 2018 |
| Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease FJ Ryan, AM Ahern, RS Fitzgerald, EJ Laserna-Mendieta, EM Power, ... Nature communications 11 (1), 1512, 2020 | 209 | 2020 |
| A comparison of the gut microbiome between long‐term users and non‐users of proton pump inhibitors AG Clooney, CN Bernstein, WD Leslie, K Vagianos, M Sargent, ... Alimentary pharmacology & therapeutics 43 (9), 974-984, 2016 | 172 | 2016 |
| Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study AG Clooney, J Eckenberger, E Laserna-Mendieta, KA Sexton, ... Gut 70 (3), 499-510, 2021 | 169 | 2021 |
| A clinician's guide to microbiome analysis MJ Claesson, AG Clooney, PW O'toole Nature Reviews Gastroenterology & Hepatology 14 (10), 585-595, 2017 | 161 | 2017 |
| Choice of assembly software has a critical impact on virome characterisation TDS Sutton, AG Clooney, FJ Ryan, RP Ross, C Hill Microbiome 7, 1-15, 2019 | 131 | 2019 |
| Determinants of reduced genetic capacity for butyrate synthesis by the gut microbiome in Crohn’s disease and ulcerative colitis EJ Laserna-Mendieta, AG Clooney, JF Carretero-Gomez, C Moran, ... Journal of Crohn's and Colitis 12 (2), 204-216, 2018 | 94 | 2018 |
| Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection V Las Heras, AG Clooney, FJ Ryan, R Cabrera-Rubio, PG Casey, ... Microbiome 7, 1-12, 2019 | 71 | 2019 |
| Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens E Guerin, AN Shkoporov, SR Stockdale, JC Comas, EV Khokhlova, ... Microbiome 9, 1-21, 2021 | 59 | 2021 |
| Evaluation of Phage Therapy in the Context of Enterococcus faecalis and Its Associated Diseases AS Bolocan, A Upadrasta, PH de Almeida Bettio, AG Clooney, LA Draper, ... Viruses 11 (4), 366, 2019 | 58 | 2019 |
| Stability of the human gut virome and effect of gluten-free diet S Garmaeva, A Gulyaeva, T Sinha, AN Shkoporov, AG Clooney, ... Cell reports 35 (7), 2021 | 42 | 2021 |
| A postbiotic consisting of heat-treated lactobacilli has a bifidogenic effect in pure culture and in human fermented fecal communities AK Warda, AG Clooney, F Ryan, PH de Almeida Bettio, G Di Benedetto, ... Applied and environmental microbiology 87 (8), e02459-20, 2021 | 23 | 2021 |
| Isolation of a Novel Jumbo Bacteriophage Effective Against Klebsiella aerogenes R Lewis, AG Clooney, SR Stockdale, C Buttimer, LA Draper, RP Ross, ... Frontiers in Medicine 7, 67, 2020 | 23 | 2020 |
| Oral administration of heat-treated Lactobacilli modifies the murine microbiome and reduces Citrobacter induced colitis AK Warda, PH de Almeida Bettio, CM Hueston, G Di Benedetto, ... Frontiers in Microbiology 11, 497858, 2020 | 20 | 2020 |
| Giant oversights in the human gut virome TDS Sutton, AG Clooney, C Hill Gut 69 (7), 1357-1358, 2020 | 19 | 2020 |
| Interpersonal variability of the human gut virome confounds disease signal detection in IBD SR Stockdale, AN Shkoporov, EV Khokhlova, KM Daly, SA McDonnell, ... Communications Biology 6 (1), 221, 2023 | 6 | 2023 |
