Shaun D. Jackman
Shaun D. Jackman
10x Genomics
Verified email at 10xgenomics.com - Homepage
Title
Cited by
Cited by
Year
ABySS: a parallel assembler for short read sequence data
JT Simpson, K Wong, SD Jackman, JE Schein, SJM Jones, İ Birol
Genome research 19 (6), 1117-1123, 2009
35182009
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
RD Morin, M Mendez-Lago, AJ Mungall, R Goya, KL Mungall, RD Corbett, ...
Nature 476 (7360), 298-303, 2011
14832011
De novo assembly and analysis of RNA-seq data
G Robertson, J Schein, R Chiu, R Corbett, M Field, SD Jackman, ...
Nature methods 7 (11), 909-912, 2010
9672010
The genetic landscape of high-risk neuroblastoma
TJ Pugh, O Morozova, EF Attiyeh, S Asgharzadeh, JS Wei, D Auclair, ...
Nature genetics 45 (3), 279-284, 2013
8242013
Subgroup-specific structural variation across 1,000 medulloblastoma genomes
PA Northcott, DJH Shih, J Peacock, L Garzia, AS Morrissy, T Zichner, ...
Nature 488 (7409), 49-56, 2012
7272012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 2047-217X-2-10, 2013
6642013
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
5522011
De novo transcriptome assembly with ABySS
I Birol, SD Jackman, CB Nielsen, JQ Qian, R Varhol, G Stazyk, RD Morin, ...
Bioinformatics 25 (21), 2872-2877, 2009
4712009
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data
I Birol, A Raymond, SD Jackman, S Pleasance, R Coope, GA Taylor, ...
Bioinformatics 29 (12), 1492-1497, 2013
3582013
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
3422017
Concurrent CIC mutations, IDH mutations and 1p/19q loss distinguish oligodendrogliomas from other cancers
S Yip, YS Butterfield, O Morozova, S Chittaranjan, MD Blough, J An, I Birol, ...
The Journal of Pathology 226 (1), 7-16, 2012
2792012
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest
CI Keeling, MMS Yuen, NY Liao, TR Docking, SK Chan, GA Taylor, ...
Genome biology 14 (3), 1-20, 2013
2432013
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ...
The Plant Journal 83 (2), 189-212, 2015
1562015
On the representation of de Bruijn graphs
R Chikhi, A Limasset, S Jackman, JT Simpson, P Medvedev
Research in Computational Molecular Biology 8394, 35-55, 2014
1042014
Sealer: a scalable gap-closing application for finishing draft genomes
D Paulino, RL Warren, BP Vandervalk, A Raymond, SD Jackman, I Birol
BMC bioinformatics 16 (1), 1-8, 2015
1002015
ABySS-Explorer: visualizing genome sequence assemblies
CB Nielsen, SD Jackman, I Birol, SJM Jones
IEEE Transactions on Visualization and Computer Graphics 15 (6), 881-888, 2009
902009
Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii
M Lenassi, C Gostinčar, S Jackman, M Turk, I Sadowski, C Nislow, ...
PLoS One 8 (8), e71328, 2013
872013
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ...
Bioinformatics 30 (23), 3402-3404, 2014
702014
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
652020
The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera
S Haridas, Y Wang, L Lim, SM Alamouti, S Jackman, R Docking, ...
BMC genomics 14 (1), 1-15, 2013
532013
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