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Rafael Najmanovich
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Side‐chain flexibility in proteins upon ligand binding
R Najmanovich, J Kuttner, V Sobolev, M Edelman
Proteins: Structure, Function, and Bioinformatics 39 (3), 261-268, 2000
3532000
A method for localizing ligand binding pockets in protein structures
F Glaser, RJ Morris, RJ Najmanovich, RA Laskowski, JM Thornton
PROTEINS: Structure, Function, and Bioinformatics 62 (2), 479-488, 2006
2502006
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons
RJ Morris, RJ Najmanovich, A Kahraman, JM Thornton
Bioinformatics 21 (10), 2347-2355, 2005
2492005
Structural and chemical profiling of the human cytosolic sulfotransferases
A Allali-Hassani, PW Pan, L Dombrovski, R Najmanovich, W Tempel, ...
PLoS biology 5 (5), e97, 2007
2442007
Importance of solvent accessibility and contact surfaces in modeling side‐chain conformations in proteins
E Eyal, R Najmanovich, BJ Mcconkey, M Edelman, V Sobolev
Journal of computational chemistry 25 (5), 712-724, 2004
1542004
Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?
M Vendruscolo, R Najmanovich, E Domany
Proteins: Structure, Function, and Bioinformatics 38 (2), 134-148, 2000
1332000
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites
R Najmanovich, N Kurbatova, J Thornton
Bioinformatics 24 (16), i105-i111, 2008
1252008
ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability
V Frappier, M Chartier, RJ Najmanovich
Nucleic acids research 43 (W1), W395-W400, 2015
1222015
Kinome Render: a stand-alone and web-accessible tool to annotate the human protein kinome tree
M Chartier, T Chénard, J Barker, R Najmanovich
PeerJ 1, e126, 2013
1052013
A coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutations
V Frappier, RJ Najmanovich
PLoS computational biology 10 (4), e1003569, 2014
892014
Protein folding in contact map space
M Vendruscolo, R Najmanovich, E Domany
Physical Review Letters 82 (3), 656, 1999
841999
Structural chemistry of the histone methyltransferases cofactor binding site
V Campagna-Slater, MW Mok, KT Nguyen, M Feher, R Najmanovich, ...
Journal of chemical information and modeling 51 (3), 612-623, 2011
802011
Design and synthesis of potent, selective inhibitors of matriptase
É Colombo, A Désilets, D Duchêne, F Chagnon, R Najmanovich, R Leduc, ...
ACS medicinal chemistry letters 3 (7), 530-534, 2012
652012
Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants
N Teruel, O Mailhot, RJ Najmanovich
PLoS computational biology 17 (8), e1009286, 2021
612021
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events
M Chartier, F Gaudreault, R Najmanovich
Bioinformatics 28 (11), 1438-1445, 2012
602012
Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding
F Gaudreault, M Chartier, R Najmanovich
Bioinformatics 28 (18), i423-i430, 2012
592012
Mammalian StAR-related lipid transfer (START) domains with specificity for cholesterol: structural conservation and mechanism of reversible binding
P Lavigne, R Najmanivich, JG LeHoux
Cholesterol Binding and Cholesterol Transport Proteins:, 425-437, 2010
572010
Structural analysis of metal sites in proteins: non-heme iron sites as a case study
C Andreini, I Bertini, G Cavallaro, RJ Najmanovich, JM Thornton
Journal of molecular biology 388 (2), 356-380, 2009
562009
FlexAID: revisiting docking on non-native-complex structures
F Gaudreault, RJ Najmanovich
Journal of chemical information and modeling 55 (7), 1323-1336, 2015
522015
NRGsuite: a PyMOL plugin to perform docking simulations in real time using FlexAID
F Gaudreault, LP Morency, RJ Najmanovich
Bioinformatics 31 (23), 3856-3858, 2015
512015
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Articles 1–20