Mehdi Mirzaie
TitleCited byYear
Ranked k-medoids: A fast and accurate rank-based partitioning algorithm for clustering large datasets
SMR Zadegan, M Mirzaie, F Sadoughi
Knowledge-Based Systems 39, 133-143, 2013
462013
Updates on drug–target network; facilitating polypharmacology and data integration by growth of DrugBank database
F Barneh, M Jafari, M Mirzaie
Briefings in bioinformatics 17 (6), 1070-1080, 2015
352015
Evolutionarily conserved motifs and modules in mitochondrial protein–protein interaction networks
M Jafari, M Sadeghi, M Mirzaie, SA Marashi, M Rezaei-Tavirani
Mitochondrion 13 (6), 668-675, 2013
162013
Signaling network of lipids as a comprehensive scaffold for omics data integration in sputum of COPD patients
SA Jamalkandi, M Mirzaie, M Jafari, H Mehrani, P Shariati, ...
Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2015
152015
A distance‐dependent atomic knowledge‐based potential and force for discrimination of native structures from decoys
M Mirzaie, C Eslahchi, H Pezeshk, M Sadeghi
Proteins: Structure, Function, and Bioinformatics 77 (2), 454-463, 2009
142009
Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data
M Jafari, M Mirzaie, M Sadeghi, SA Marashi, M Rezaei-Tavirani
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1834 (6), 1063-1069, 2013
102013
Knowledge-based potentials in protein fold recognition
M Mirzaie, M Sadeghi
JOURNAL OF PARAMEDICAL SCIENCES (JPS) 1 (4), 63-73, 2010
102010
Bioactive lipids in emphysema. Decoding fat to reveal COPD phenotypes
M Mirzaie, F Kheradmand
American journal of respiratory and critical care medicine 191 (3), 241-243, 2015
72015
Proteomics and traditional medicine: new aspect in explanation of temperaments
M Jafari, H Rezadoost, M Karimi, M Mirzaie, M Rezaie-Tavirani, ...
Complementary Medicine Research 21 (4), 250-253, 2014
72014
Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms
M Jafari, M Mirzaie, M Sadeghi
BMC bioinformatics 16 (1), 319, 2015
62015
Delaunay‐based nonlocal interactions are sufficient and accurate in protein fold recognition
M Mirzaie, M Sadeghi
Proteins: Structure, Function, and Bioinformatics 82 (3), 415-423, 2014
62014
Distance‐dependent atomic knowledge‐based force in protein fold recognition
M Mirzaie, M Sadeghi
Proteins: Structure, Function, and Bioinformatics 80 (3), 683-690, 2012
52012
Human T‐lymphotropic virus 1 (HTLV‐1) pathogenesis: A systems virology study
SH Mozhgani, M Zarei‐Ghobadi, M Teymoori‐Rad, T Mokhtari‐Azad, ...
Journal of cellular biochemistry 119 (5), 3968-3979, 2018
42018
A logic-based dynamic modeling approach to explicate the evolution of the central dogma of molecular biology
M Jafari, N Ansari-Pour, S Azimzadeh, M Mirzaie
PloS one 12 (12), e0189922, 2017
42017
Role of autoregulation and relative synthesis of operon partners in alternative sigma factor networks
J Narula, A Tiwari, OA Igoshin
PLoS computational biology 12 (12), e1005267, 2016
32016
Systems biomedicine of rabies delineates the affected signaling pathways
S Azimzadeh Jamalkandi, SH Mozhgani, H Gholami Pourbadie, ...
Frontiers in microbiology 7, 1688, 2016
32016
Polarity‐based fractionation in proteomics: hydrophilic interaction vs reversed‐phase liquid chromatography
M Jafari, M Mirzaie, M Khodabandeh, H Rezadoost, A Ghassempour, ...
Biomedical Chromatography 30 (7), 1036-1041, 2016
32016
Theoretical and analytical investigation of lightning overvoltages and arrester operation
A Gholami, M Mirzaie, MR Aseban
Iranian Journal of Science & Technology, Transaction B, Engineering 30 (B2), 2006
32006
A systematic survey of centrality measures for protein-protein interaction networks
M Ashtiani, A Salehzadeh-Yazdi, Z Razaghi-Moghadam, H Hennig, ...
BMC systems biology 12 (1), 80, 2018
22018
Three-way interaction model to trace the mechanisms involved in Alzheimer’s disease transgenic mice
N Khayer, SA Marashi, M Mirzaie, F Goshadrou
PloS one 12 (9), e0184697, 2017
22017
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Articles 1–20