| A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ... Nature communications 5 (1), 1-11, 2014 | 433 | 2014 |
| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 364 | 2017 |
| Lytic to temperate switching of viral communities B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ... Nature 531 (7595), 466-470, 2016 | 261 | 2016 |
| SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data GGZ Silva, KT Green, BE Dutilh, RA Edwards Bioinformatics 32 (3), 354-361, 2016 | 87 | 2016 |
| Metagenomic analysis of healthy and white plague-affected Mussismilia braziliensis corals GD Garcia, GB Gregoracci, EO Santos, PM Meirelles, GGZ Silva, ... Microbial ecology 65 (4), 1076-1086, 2013 | 85 | 2013 |
| FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares GGZ Silva, DA Cuevas, BE Dutilh, RA Edwards PeerJ 2, e425, 2014 | 83 | 2014 |
| Oxygen minimum zones harbour novel viral communities with low diversity N Cassman, A Prieto‐Davó, K Walsh, GGZ Silva, F Angly, S Akhter, ... Environmental microbiology 14 (11), 3043-3065, 2012 | 71 | 2012 |
| Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis AE Trindade-Silva, C Rua, GGZ Silva, BE Dutilh, APB Moreira, ... PLoS One 7 (7), e39905, 2012 | 62 | 2012 |
| Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta) and its microbiome LS de Oliveira, GB Gregoracci, GGZ Silva, LT Salgado, G Amado Filho, ... BMC genomics 13 (1), 1-13, 2012 | 61 | 2012 |
| Combining de novo and reference-guided assembly with scaffold_builder GGZ Silva, BE Dutilh, TD Matthews, K Elkins, R Schmieder, EA Dinsdale, ... Source code for biology and medicine 8 (1), 1-5, 2013 | 53 | 2013 |
| Multi-analytical approach reveals potential microbial indicators in soil for sugarcane model systems AA Navarrete, TR Diniz, LPP Braga, GGZ Silva, JC Franchini, R Rossetto, ... PLoS One 10 (6), e0129765, 2015 | 38 | 2015 |
| Genomic taxonomy of the genus Prochlorococcus CC Thompson, GGZ Silva, NM Vieira, R Edwards, ACP Vicente, ... Microbial ecology 66 (4), 752-762, 2013 | 38 | 2013 |
| Microbial community diversity and physical–chemical features of the Southwestern Atlantic Ocean NA Junior, PM Meirelles, E de Oliveira Santos, B Dutilh, GGZ Silva, ... Archives of microbiology 197 (2), 165-179, 2015 | 36 | 2015 |
| Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum TD Matthews, R Schmieder, GGZ Silva, J Busch, N Cassman, BE Dutilh, ... PloS one 10 (6), e0126883, 2015 | 32 | 2015 |
| Polyketide synthase gene diversity within the microbiome of the sponge Arenosclera brasiliensis, endemic to the Southern Atlantic Ocean AE Trindade-Silva, CPJ Rua, BGN Andrade, ACP Vicente, GGZ Silva, ... Applied and environmental microbiology 79 (5), 1598-1605, 2013 | 28 | 2013 |
| Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions BE Dutilh, CC Thompson, ACP Vicente, MA Marin, C Lee, GGZ Silva, ... BMC genomics 15 (1), 1-11, 2014 | 25 | 2014 |
| Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition YW Lim, DA Cuevas, GGZ Silva, K Aguinaldo, EA Dinsdale, AF Haas, ... PeerJ 2, e520, 2014 | 22 | 2014 |
| Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes B Papudeshi, JM Haggerty, M Doane, MM Morris, K Walsh, DT Beattie, ... BMC genomics 18 (1), 1-13, 2017 | 20 | 2017 |
| Bacterial community associated with the reef coral Mussismilia braziliensis's momentum boundary layer over a diel cycle CB Silveira, GB Gregoracci, FH Coutinho, GGZ Silva, JM Haggerty, ... Frontiers in microbiology 8, 784, 2017 | 17 | 2017 |
| Chemical profiling of two congeneric sea mat corals along the Brazilian coast: adaptive and functional patterns LV Costa-Lotufo, F Carnevale-Neto, AE Trindade-Silva, RR Silva, ... Chemical Communications 54 (16), 1952-1955, 2018 | 15 | 2018 |
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, AustraliaVerified email at flinders.edu.au
