Genivaldo Gueiros Z. Silva
Title
Cited by
Cited by
Year
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ...
Nature communications 5 (1), 1-11, 2014
4332014
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
3642017
Lytic to temperate switching of viral communities
B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ...
Nature 531 (7595), 466-470, 2016
2612016
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data
GGZ Silva, KT Green, BE Dutilh, RA Edwards
Bioinformatics 32 (3), 354-361, 2016
872016
Metagenomic analysis of healthy and white plague-affected Mussismilia braziliensis corals
GD Garcia, GB Gregoracci, EO Santos, PM Meirelles, GGZ Silva, ...
Microbial ecology 65 (4), 1076-1086, 2013
852013
FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
GGZ Silva, DA Cuevas, BE Dutilh, RA Edwards
PeerJ 2, e425, 2014
832014
Oxygen minimum zones harbour novel viral communities with low diversity
N Cassman, A Prieto‐Davó, K Walsh, GGZ Silva, F Angly, S Akhter, ...
Environmental microbiology 14 (11), 3043-3065, 2012
712012
Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis
AE Trindade-Silva, C Rua, GGZ Silva, BE Dutilh, APB Moreira, ...
PLoS One 7 (7), e39905, 2012
622012
Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta) and its microbiome
LS de Oliveira, GB Gregoracci, GGZ Silva, LT Salgado, G Amado Filho, ...
BMC genomics 13 (1), 1-13, 2012
612012
Combining de novo and reference-guided assembly with scaffold_builder
GGZ Silva, BE Dutilh, TD Matthews, K Elkins, R Schmieder, EA Dinsdale, ...
Source code for biology and medicine 8 (1), 1-5, 2013
532013
Multi-analytical approach reveals potential microbial indicators in soil for sugarcane model systems
AA Navarrete, TR Diniz, LPP Braga, GGZ Silva, JC Franchini, R Rossetto, ...
PLoS One 10 (6), e0129765, 2015
382015
Genomic taxonomy of the genus Prochlorococcus
CC Thompson, GGZ Silva, NM Vieira, R Edwards, ACP Vicente, ...
Microbial ecology 66 (4), 752-762, 2013
382013
Microbial community diversity and physical–chemical features of the Southwestern Atlantic Ocean
NA Junior, PM Meirelles, E de Oliveira Santos, B Dutilh, GGZ Silva, ...
Archives of microbiology 197 (2), 165-179, 2015
362015
Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum
TD Matthews, R Schmieder, GGZ Silva, J Busch, N Cassman, BE Dutilh, ...
PloS one 10 (6), e0126883, 2015
322015
Polyketide synthase gene diversity within the microbiome of the sponge Arenosclera brasiliensis, endemic to the Southern Atlantic Ocean
AE Trindade-Silva, CPJ Rua, BGN Andrade, ACP Vicente, GGZ Silva, ...
Applied and environmental microbiology 79 (5), 1598-1605, 2013
282013
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
BE Dutilh, CC Thompson, ACP Vicente, MA Marin, C Lee, GGZ Silva, ...
BMC genomics 15 (1), 1-11, 2014
252014
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
YW Lim, DA Cuevas, GGZ Silva, K Aguinaldo, EA Dinsdale, AF Haas, ...
PeerJ 2, e520, 2014
222014
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes
B Papudeshi, JM Haggerty, M Doane, MM Morris, K Walsh, DT Beattie, ...
BMC genomics 18 (1), 1-13, 2017
202017
Bacterial community associated with the reef coral Mussismilia braziliensis's momentum boundary layer over a diel cycle
CB Silveira, GB Gregoracci, FH Coutinho, GGZ Silva, JM Haggerty, ...
Frontiers in microbiology 8, 784, 2017
172017
Chemical profiling of two congeneric sea mat corals along the Brazilian coast: adaptive and functional patterns
LV Costa-Lotufo, F Carnevale-Neto, AE Trindade-Silva, RR Silva, ...
Chemical Communications 54 (16), 1952-1955, 2018
152018
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Articles 1–20