Dr. Matthias König
Dr. Matthias König
Bestätigte E-Mail-Adresse bei hu-berlin.de - Startseite
Titel
Zitiert von
Zitiert von
Jahr
HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology
C Gille, C Bölling, A Hoppe, S Bulik, S Hoffmann, K Hübner, A Karlstädt, ...
Molecular systems biology 6 (1), 411, 2010
3002010
Quantifying the contribution of the liver to glucose homeostasis: a detailed kinetic model of human hepatic glucose metabolism
M König, S Bulik, HG Holzhütter
PLoS computational biology 8 (6), e1002577, 2012
1772012
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
932020
libRoadRunner: a high performance SBML simulation and analysis library
ET Somogyi, JM Bouteiller, JA Glazier, M König, JK Medley, MH Swat, ...
Bioinformatics 31 (20), 3315-3321, 2015
862015
Enzymatic features of the glucose metabolism in tumor cells
A Herling, M König, S Bulik, HG Holzhütter
The FEBS journal 278 (14), 2436-2459, 2011
732011
Modeling function–perfusion behavior in liver lobules including tissue, blood, glucose, lactate and glycogen by use of a coupled two-scale PDE–ODE approach
T Ricken, D Werner, HG Holzhütter, M König, U Dahmen, O Dirsch
Biomechanics and modeling in mechanobiology 14 (3), 515-536, 2015
602015
Tellurium: an extensible python-based modeling environment for systems and synthetic biology
K Choi, JK Medley, M König, K Stocking, L Smith, S Gu, HM Sauro
Biosystems 171, 74-79, 2018
502018
Toward community standards and software for whole-cell modeling
D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ...
IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016
492016
Pathobiochemical signatures of cholestatic liver disease in bile duct ligated mice
K Abshagen, M König, A Hoppe, I Müller, M Ebert, H Weng, HG Holzhütter, ...
BMC systems biology 9 (1), 1-21, 2015
482015
CySBML: a Cytoscape plugin for SBML
M König, A Dräger, HG Holzhütter
Bioinformatics 28 (18), 2402-2403, 2012
372012
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
352020
Harmonizing semantic annotations for computational models in biology
ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ...
Briefings in bioinformatics 20 (2), 540-550, 2019
322019
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2
M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ...
Journal of integrative bioinformatics 16 (2), 2019
282019
Fluxviz—Cytoscape plug-in for visualization of flux distributions in networks
M König, HG Holzhütter
Genome Informatics 2010: Genome Informatics Series Vol. 24, 96-103, 2010
282010
Tellurium notebooks—an environment for reproducible dynamical modeling in systems biology
JK Medley, K Choi, M König, L Smith, S Gu, J Hellerstein, SC Sealfon, ...
PLoS computational biology 14 (6), e1006220, 2018
272018
HEPATOKIN1 is a biochemistry-based model of liver metabolism for applications in medicine and pharmacology
N Berndt, S Bulik, I Wallach, T Wünsch, M König, M Stockmann, ...
Nature communications 9 (1), 1-12, 2018
232018
Computational modeling in liver surgery
B Christ, U Dahmen, KH Herrmann, M König, JR Reichenbach, T Ricken, ...
Frontiers in physiology 8, 906, 2017
202017
Kinetic modeling of human hepatic glucose metabolism in type 2 diabetes mellitus predicts higher risk of hypoglycemic events in rigorous insulin therapy
M König, HG Holzhütter
Journal of Biological Chemistry 287 (44), 36978-36989, 2012
19*2012
Tellurium: A python based modeling and reproducibility platform for systems biology
K Choi, JK Medley, C Cannistra, M König, L Smith, K Stocking, HM Sauro
BioRxiv, 054601, 2016
162016
Metabolic gradients as key regulators in zonation of tumor energy metabolism: A tissue‐scale model‐based study
M König, HG Holzhütter, N Berndt
Biotechnology journal 8 (9), 1058-1069, 2013
162013
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