Comparative genomics of ethanolamine utilization O Tsoy, D Ravcheev, A Mushegian Journal of bacteriology 191 (23), 7157-7164, 2009 | 110 | 2009 |
Nitrogen fixation and molecular oxygen: comparative genomic reconstruction of transcription regulation in Alphaproteobacteria OV Tsoy, DA Ravcheev, J Čuklina, MS Gelfand Frontiers in microbiology 7, 196683, 2016 | 83 | 2016 |
Comparative genomics and evolution of regulons of the LacI-family transcription factors DA Ravcheev, MS Khoroshkin, ON Laikova, OV Tsoy, NV Sernova, ... Frontiers in microbiology 5, 294, 2014 | 83 | 2014 |
Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan‐Vavilov Deep F Smedile, E Messina, V La Cono, O Tsoy, LS Monticelli, M Borghini, ... Environmental microbiology 15 (1), 167-182, 2013 | 64 | 2013 |
DIGGER: exploring the functional role of alternative splicing in protein interactions Z Louadi, K Yuan, A Gress, O Tsoy, OV Kalinina, J Baumbach, ... Nucleic acids research 49 (D1), D309-D318, 2021 | 35 | 2021 |
Evolution of transcriptional regulation in closely related bacteria OV Tsoy, MA Pyatnitskiy, MD Kazanov, MS Gelfand BMC evolutionary biology 12, 1-11, 2012 | 13 | 2012 |
Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases Z Louadi, ML Elkjaer, M Klug, CT Lio, A Fenn, Z Illes, D Bongiovanni, ... Genome Biology 22, 1-22, 2021 | 12 | 2021 |
Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110 J Hahn, OV Tsoy, S Thalmann, J Čuklina, MS Gelfand, ... PLoS One 11 (10), e0165429, 2016 | 10 | 2016 |
Alternative splicing analysis benchmark with DICAST A Fenn, O Tsoy, T Faro, FLM Rößler, A Dietrich, J Kersting, Z Louadi, ... NAR Genomics and Bioinformatics 5 (2), lqad044, 2023 | 8 | 2023 |
ASimulatoR: splice-aware RNA-Seq data simulation Q Manz, O Tsoy, A Fenn, J Baumbach, U Völker, M List, T Kacprowski Bioinformatics 37 (18), 3008-3010, 2021 | 7 | 2021 |
Minimal genome encoding proteins with constrained amino acid repertoire O Tsoy, M Yurieva, A Kucharavy, M O'Reilly, A Mushegian Nucleic acids research 41 (18), 8444-8451, 2013 | 6 | 2013 |
Systematic analysis of alternative splicing in time course data using Spycone CT Lio, G Grabert, Z Louadi, A Fenn, J Baumbach, T Kacprowski, M List, ... Bioinformatics 39 (1), btac846, 2023 | 5 | 2023 |
Florigen and its homologs of FT/CETS/PEBP/RKIP/YbhB family may be the enzymes of small molecule metabolism: review of the evidence O Tsoy, A Mushegian BMC Plant Biology 22 (1), 56, 2022 | 5 | 2022 |
A YAP/TAZ–ARHGAP29–RhoA Signaling Axis Regulates Podocyte Protrusions and Integrin Adhesions M Rogg, JI Maier, M Helmstädter, A Sammarco, F Kliewe, O Kretz, ... Cells 12 (13), 1795, 2023 | 1 | 2023 |
Exploring Common Mechanisms of Adverse Drug Reactions and Disease Phenotypes F Firoozbakht, D E Handy, R Wang, J Loscalzo, J Baumbach, OV Tsoy RExPO24 Conference, 2024 | | 2024 |
The power and limits of predicting exon-exon interactions using protein 3D structures J Liebold, A Del Moral-Morales, K Manalastas-Cantos, O Tsoy, S Kurtz, ... bioRxiv, 2024.03. 01.582917, 2024 | | 2024 |
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions CT Lio, T Düz, MD Hoffmann, LL Willruth, J Baumbach, O Tsoy, M List bioRxiv, 2024.01. 14.575548, 2024 | | 2024 |
Network medicine-based epistasis detection in complex diseases: ready for quantum computing M Hoffmann, JM Poschenrieder, M Incudini, S Baier, A Fitz, A Maier, ... Medrxiv, 2023 | | 2023 |
Proteomic meta-study harmonization, mechanotyping and drug repurposing candidate prediction with ProHarMeD K Adamowicz, L Arend, A Maier, JR Schmidt, B Kuster, O Tsoy, ... npj Systems Biology and Applications 9 (1), 49, 2023 | | 2023 |
Detection of alternative splicing: deep sequencing or deep learning LM Hackl, J Baumbach, OV Tsoy Genetoberfest 2023, 2023 | | 2023 |