Johannes Söding
TitleCited byYear
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
F Sievers, A Wilm, D Dineen, TJ Gibson, K Karplus, W Li, R Lopez, ...
Molecular systems biology 7 (1), 539, 2011
66892011
The HHpred interactive server for protein homology detection and structure prediction
J Söding, A Biegert, AN Lupas
Nucleic acids research 33 (suppl_2), W244-W248, 2005
24972005
Protein homology detection by HMM–HMM comparison
J Söding
Bioinformatics 21 (7), 951-960, 2004
20542004
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
M Remmert, A Biegert, A Hauser, J Söding
Nature methods 9 (2), 173, 2012
9512012
Uniform transitions of the general RNA polymerase II transcription complex
A Mayer, M Lidschreiber, M Siebert, K Leike, J Söding, P Cramer
Nature structural & molecular biology 17 (10), 1272, 2010
3992010
Fast and accurate automatic structure prediction with HHpred
A Hildebrand, M Remmert, A Biegert, J Söding
Proteins: Structure, Function, and Bioinformatics 77 (S9), 128-132, 2009
3122009
The MPI Bioinformatics Toolkit for protein sequence analysis
A Biegert, C Mayer, M Remmert, J Söding, AN Lupas
Nucleic acids research 34 (suppl_2), W335-W339, 2006
2902006
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
V Alva, SZ Nam, J Söding, AN Lupas
Nucleic acids research 44 (W1), W410-W415, 2016
2692016
Three-body decay of a rubidium Bose–Einstein condensate
J Söding, D Guéry-Odelin, P Desbiolles, F Chevy, H Inamori, J Dalibard
Applied physics B 69 (4), 257-261, 1999
2691999
More than the sum of their parts: on the evolution of proteins from peptides
J Söding, AN Lupas
Bioessays 25 (9), 837-846, 2003
2082003
A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core
L Zimmermann, A Stephens, SZ Nam, D Rau, J Kübler, M Lozajic, ...
Journal of molecular biology 430 (15), 2237-2243, 2018
1912018
Sequence context-specific profiles for homology searching
A Biegert, J Söding
Proceedings of the National Academy of Sciences 106 (10), 3770-3775, 2009
1872009
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution
JP Armache, A Jarasch, AM Anger, E Villa, T Becker, S Bhushan, ...
Proceedings of the National Academy of Sciences 107 (46), 19748-19753, 2010
1742010
Giant spin relaxation of an ultracold cesium gas
J Söding, D Guéry-Odelin, P Desbiolles, G Ferrari, J Dalibard
Physical review letters 80 (9), 1869, 1998
1691998
TPRpred: a tool for prediction of TPR-, PPR-and SEL1-like repeats from protein sequences
MR Karpenahalli, AN Lupas, J Söding
BMC bioinformatics 8 (1), 2, 2007
1662007
Gravitational laser trap for atoms with evanescent-wave cooling
J Söding, R Grimm, YB Ovchinnikov
Optics communications 119 (5-6), 652-662, 1995
1581995
Transcriptome surveillance by selective termination of noncoding RNA synthesis
D Schulz, B Schwalb, A Kiesel, C Baejen, P Torkler, J Gagneur, J Soeding, ...
Cell 155 (5), 1075-1087, 2013
1522013
The Mre11: Rad50 structure shows an ATP-dependent molecular clamp in DNA double-strand break repair
K Lammens, DJ Bemeleit, C Möckel, E Clausing, A Schele, S Hartung, ...
Cell 145 (1), 54-66, 2011
1492011
CCMpred—fast and precise prediction of protein residue–residue contacts from correlated mutations
S Seemayer, M Gruber, J Söding
Bioinformatics 30 (21), 3128-3130, 2014
1342014
Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome
JP Armache, A Jarasch, AM Anger, E Villa, T Becker, S Bhushan, ...
Proceedings of the National Academy of Sciences 107 (46), 19754-19759, 2010
1332010
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Articles 1–20