Omer S. Alkhnbashi
Omer S. Alkhnbashi
Bioinformatics Group Department of Computer Science Albert-Ludwigs-University Freiburg Georges
Verified email at informatik.uni-freiburg.de - Homepage
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Year
An updated evolutionary classification of CRISPR–Cas systems
KS Makarova, YI Wolf, OS Alkhnbashi, F Costa, SA Shah, SJ Saunders, ...
Nature Reviews Microbiology 13 (11), 722-736, 2015
15232015
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ...
Nature Reviews Microbiology 18 (2), 67-83, 2020
1532020
CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems
SJ Lange, OS Alkhnbashi, D Rose, S Will, R Backofen
Nucleic acids research 41 (17), 8034-8044, 2013
1122013
CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci
OS Alkhnbashi, F Costa, SA Shah, RA Garrett, SJ Saunders, R Backofen
Bioinformatics 30 (17), i489-i496, 2014
482014
Characterizing leader sequences of CRISPR loci
OS Alkhnbashi, SA Shah, RA Garrett, SJ Saunders, F Costa, R Backofen
Bioinformatics 32 (17), i576-i585, 2016
472016
Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families
SA Shah, OS Alkhnbashi, J Behler, W Han, Q She, WR Hess, RA Garrett, ...
RNA biology 16 (4), 530-542, 2019
372019
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ...
Nucleic acids research 46 (W1), W25-W29, 2018
342018
The role of Cas8 in type I CRISPR interference
SDB Cass, KA Haas, B Stoll, OS Alkhnbashi, K Sharma, H Urlaub, ...
Bioscience reports 35 (3), 2015
312015
Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs
V Reimann, OS Alkhnbashi, SJ Saunders, I Scholz, S Hein, R Backofen, ...
Nucleic acids research 45 (2), 915-925, 2017
192017
Methanosarcina spherical virus, a novel archaeal lytic virus targeting methanosarcina strains
K Weidenbach, L Nickel, H Neve, OS Alkhnbashi, S Künzel, A Kupczok, ...
Journal of virology 91 (22), 2017
162017
CRISPR-Cas bioinformatics
OS Alkhnbashi, T Meier, A Mitrofanov, R Backofen, B Voß
Methods 172, 3-11, 2020
122020
CRISPR-Cas systems in multicellular cyanobacteria
S Hou, M Brenes-Álvarez, V Reimann, OS Alkhnbashi, R Backofen, ...
RNA biology 16 (4), 518-529, 2019
112019
The nuts and bolts of the Haloferax CRISPR-Cas system I-B
LK Maier, AE Stachler, J Brendel, B Stoll, S Fischer, KA Haas, TS Schwarz, ...
RNA biology 16 (4), 469-480, 2019
112019
Plasticity of archaeal C/D box sRNA biogenesis
V Tripp, R Martin, A Orell, OS Alkhnbashi, R Backofen, L Randau
Molecular microbiology 103 (1), 151-164, 2017
92017
Cross-cleavage activity of Cas6b in crRNA processing of two different CRISPR-Cas systems in Methanosarcina mazei Gö1
L Nickel, A Ulbricht, OS Alkhnbashi, KU Förstner, L Cassidy, ...
RNA biology 16 (4), 492-503, 2019
82019
CRISPR and Salty: CRISPR-Cas systems in Haloarchaea
LK Maier, OS Alkhnbashi, R Backofen, A Marchfelder
RNA Metabolism and Gene Expression in Archaea, 243-269, 2017
42017
Conserved accessory proteins encoded with archaeal and bacterial Type III CRISPR-Cas gene cassettes that may specifically modulate, complement or extend interference activity
SA Shah, OS Alkhnbashi, J Behler, W Han, Q She, WR Hess, RA Garrett, ...
BioRxiv, 262675, 2018
22018
Adaptation induced by self-targeting in a type IB CRISPR-Cas system
AE Stachler, J Wörtz, OS Alkhnbashi, I Turgeman-Grott, R Smith, T Allers, ...
Journal of Biological Chemistry 295 (39), 13502-13515, 2020
12020
CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
VA Padilha, OS Alkhnbashi, SA Shah, AC De Carvalho, R Backofen
GigaScience 9 (6), giaa062, 2020
12020
Casboundary: Automated definition of integral Cas cassettes
VA Padilha, OS Alkhnbashi, VD Tran, SA Shah, ACP L F Carvalho, ...
Bioinformatics, 2020
2020
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