Heewook Lee
Heewook Lee
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Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species
JH Werren, S Richards, CA Desjardins, O Niehuis, J Gadau, ...
Science 327 (5963), 343-348, 2010
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
H Lee, E Popodi, H Tang, PL Foster
Proceedings of the National Academy of Sciences 109 (41), E2774-E2783, 2012
A highly annotated whole-genome sequence of a Korean individual
JI Kim, YS Ju, H Park, S Kim, S Lee, JH Yi, J Mudge, NA Miller, D Hong, ...
nature 460 (7258), 1011-1015, 2009
The Complete Genome Sequence of Thermococcus onnurineus NA1 Reveals a Mixed Heterotrophic and Carboxydotrophic Metabolism
HS Lee, SG Kang, SS Bae, JK Lim, Y Cho, YJ Kim, JH Jeon, SS Cha, ...
Journal of bacteriology 190 (22), 7491-7499, 2008
Antibiotic treatment enhances the genome-wide mutation rate of target cells
H Long, SF Miller, C Strauss, C Zhao, L Cheng, Z Ye, K Griffin, R Te, ...
Proceedings of the National Academy of Sciences 113 (18), E2498-E2505, 2016
Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing
PL Foster, H Lee, E Popodi, JP Townes, H Tang
Proceedings of the National Academy of Sciences 112 (44), E5990-E5999, 2015
Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli
AS Bhagwat, W Hao, JP Townes, H Lee, H Tang, PL Foster
Proceedings of the National Academy of Sciences 113 (8), 2176-2181, 2016
Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli
H Lee, TG Doak, E Popodi, PL Foster, H Tang
Nucleic acids research 44 (15), 7109-7119, 2016
On the mutational topology of the bacterial genome
PL Foster, AJ Hanson, H Lee, EM Popodi, H Tang
G3: Genes, Genomes, Genetics 3 (3), 399-407, 2013
Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans
H Long, S Kucukyildirim, W Sung, E Williams, H Lee, M Ackerman, ...
Molecular biology and evolution 32 (9), 2383-2392, 2015
Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery
H Lee, C Kingsford
Genome biology 19 (1), 1-16, 2018
Adaptation of Escherichia coli to long-term serial passage in complex medium: evidence of parallel evolution
KE Kram, C Geiger, WM Ismail, H Lee, H Tang, PL Foster, SE Finkel
Msystems 2 (2), e00192-16, 2017
Explaining a black-box using deep variational information bottleneck approach
S Bang, P Xie, H Lee, W Wu, E Xing
The Thirty-Fifth AAAI Conference on Artificial Intelligence (AAAI-21), 2021
Next-generation sequencing technologies and fragment assembly algorithms
H Lee, H Tang
Evolutionary genomics, 155-174, 2012
Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli
PL Foster, BA Niccum, E Popodi, JP Townes, H Lee, W MohammedIsmail, ...
Genetics 209 (4), 1029-1042, 2018
Adaptation of Escherichia coli to long-term batch culture in various rich media
LL Westphal, J Lau, Z Negro, IJ Moreno, WI Mohammed, H Lee, H Tang, ...
Research in microbiology 169 (3), 145-156, 2018
Detection of structural variants involving repetitive regions in the reference genome
H Lee, E Popodi, PL Foster, H Tang
Journal of Computational Biology 21 (3), 219-233, 2014
The symmetrical wave pattern of base-pair substitution rates across the Escherichia coli chromosome has multiple causes
BA Niccum, H Lee, W MohammedIsmail, H Tang, PL Foster
Mbio 10 (4), e01226-19, 2019
The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of Escherichia coli
BA Niccum, H Lee, W MohammedIsmail, H Tang, PL Foster
Genetics 209 (4), 1043-1054, 2018
Genomic and Metagenomic Analysis of Diversity-Generating Retroelements Associated with Treponema denticola
YY Sutichot Nimkulrat, Heewook Lee, Thomas G Doak
Frontiers in Microbiology 7 (852), 2016
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