Ian Sudbery
Ian Sudbery
Lecturer in Bioinfomatics, University of Sheffield
Verified email at sheffield.ac.uk
TitleCited byYear
Sequencing depth and coverage: key considerations in genomic analyses
D Sims, I Sudbery, NE Ilott, A Heger, CP Ponting
Nature Reviews Genetics 15 (2), 121-132, 2014
8752014
Apoptosis induced by environmental stresses and amphotericin B in Candida albicans
AJ Phillips, I Sudbery, M Ramsdale
Proceedings of the National Academy of Sciences 100 (24), 14327-14332, 2003
3612003
KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands
AM Farcas, NP Blackledge, I Sudbery, HK Long, JF McGouran, NR Rose, ...
elife 1, e00205, 2012
2882012
UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
T Smith, A Heger, I Sudbery
Genome research 27 (3), 491-499, 2017
1782017
Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy
P Rajan, IM Sudbery, MEM Villasevil, E Mui, J Fleming, M Davis, I Ahmad, ...
European urology 66 (1), 32-39, 2014
842014
High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta
C Daelemans, ME Ritchie, G Smits, S Abu-Amero, IM Sudbery, MS Forrest, ...
BMC genetics 11 (1), 25, 2010
702010
Next-generation sequencing of vertebrate experimental organisms
DJ Turner, TM Keane, I Sudbery, DJ Adams
Mammalian genome 20 (6), 327-338, 2009
522009
Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis
I Sudbery, AJ Enright, AG Fraser, I Dunham
BMC genomics 11 (1), 175, 2010
442010
CGAT: computational genomics analysis toolkit
D Sims, NE Ilott, SN Sansom, IM Sudbery, JS Johnson, KA Fawcett, ...
Bioinformatics 30 (9), 1290-1291, 2014
392014
Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver …
I Sudbery, J Stalker, JT Simpson, T Keane, AG Rust, ME Hurles, K Walter, ...
Genome biology 10 (10), R112, 2009
372009
Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre-and post-treatment prostatic biopsies from patients with advanced prostate cancer
P Rajan, J Stockley, IM Sudbery, JT Fleming, A Hedley, G Kalna, D Sims, ...
BMC cancer 14 (1), 977, 2014
232014
Phosphoregulation of Nap1 plays a role in septin ring dynamics and morphogenesis in Candida albicans
ZX Huang, P Zhao, GS Zeng, YM Wang, I Sudbery, Y Wang
MBio 5 (1), e00915-13, 2014
172014
The m 6 A-methylase complex recruits TREX and regulates mRNA export
S Lesbirel, N Viphakone, M Parker, J Parker, C Heath, I Sudbery, ...
Scientific reports 8 (1), 13827, 2018
132018
UCHL3 regulates topoisomerase-induced chromosomal break repair by controlling TDP1 Proteostasis
C Liao, R Beveridge, JJR Hudson, JD Parker, SC Chiang, S Ray, ...
Cell reports 23 (11), 3352-3365, 2018
132018
Cell cycle-independent phospho-regulation of Fkh2 during hyphal growth regulates Candida albicans pathogenesis
JA Greig, IM Sudbery, JP Richardson, JR Naglik, Y Wang, PE Sudbery
PLoS pathogens 11 (1), e1004630, 2015
112015
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
A Srivastava, L Malik, T Smith, I Sudbery, R Patro
Genome biology 20 (1), 65, 2019
82019
Co-transcriptional loading of RNA export factors shapes the human transcriptome
N Viphakone, I Sudbery, L Griffith, CG Heath, D Sims, SA Wilson
Molecular cell, 2019
32019
Proteins that physically interact with the phosphatase Cdc14 in Candida albicans have diverse roles in the cell cycle
IN Kaneva, IM Sudbery, MJ Dickman, PE Sudbery
Scientific reports 9 (1), 6258, 2019
32019
CGAT-core: a python framework for building scalable, reproducible computational biology workflows
AP Cribbs, S Luna-Valero, C George, IM Sudbery, AJ Berlanga-Taylor, ...
F1000Research 8, 2019
32019
Distinct Chromatin Accessibility Changes, Aberrant Transcription Factor Networks Combined with Novel Oncogenic Enhancers Characterise Myeloma-Initiating Genetic Events
N Trasanidis, J Alvarez-Benayas, A Katsarou, A Chaidos, PC May, ...
Blood, The Journal of the American Society of Hematology 134 (Supplement_1 …, 2019
2019
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