Oriol Fornes
TitelZitiert vonJahr
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ...
Nucleic acids research 44 (D1), D110-D115, 2015
6912015
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2017
4102017
Backup in gene regulatory networks explains differences between binding and knockout results
A Gitter, Z Siegfried, M Klutstein, O Fornes, B Oliva, I Simon, Z Bar‐Joseph
Molecular systems biology 5 (1), 2009
712009
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis
SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ...
Nature communications 7, 12460, 2016
512016
Knowledge environments representing molecular entities for the virtual physiological human
M Hofmann-Apitius, J Fluck, L Furlong, O Fornes, C Kolářik, S Hanser, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2008
302008
Evaluating the impact of single nucleotide variants on transcription factor binding
W Shi, O Fornes, A Mathelier, WW Wasserman
Nucleic acids research 44 (21), 10106-10116, 2016
262016
Networks of Protein-Protein Interactions: From Uncertainty to Molecular Details
J Garcia‐Garcia, J Bonet, E Guney, O Fornes, J Planas, B Oliva
Molecular Informatics 31 (5), 342-362, 2012
212012
ModLink+: improving fold recognition by using protein–protein interactions
O Fornes, R Aragues, J Espadaler, MA Marti-Renom, A Sali, B Oliva
Bioinformatics 25 (12), 1506-1512, 2009
162009
On the use of knowledge-based potentials for the evaluation of models of protein–protein, protein–DNA, and protein–RNA interactions
O Fornes, J Garcia-Garcia, J Bonet, B Oliva
Advances in protein chemistry and structural biology 94, 77-120, 2014
142014
New MiniPromoter Ple345 (NEFL) Drives Strong and Specific Expression in Retinal Ganglion Cells of Mouse and Primate Retina
EM Simpson, AJ Korecki, O Fornes, TJ McGill, JL Cueva-Vargas, ...
Human gene therapy 30 (3), 257-272, 2019
42019
InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research
D Poglayen, MA Marín-López, J Bonet, O Fornes, J Garcia-Garcia, ...
Biochemical Society Transactions 44 (3), 917-924, 2016
32016
Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants
W Shi, O Fornes, WW Wasserman
Bioinformatics, 2018
22018
c-Myc is a novel Leishmania virulence factor by proxy that targets the host miRNA system and is essential for survival in human macrophages
L Colineau, U Lambertz, O Fornes, WW Wasserman, NE Reiner
Journal of Biological Chemistry 293 (33), 12805-12819, 2018
22018
MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations
O Fornes, M Gheorghe, PA Richmond, DJ Arenillas, WW Wasserman, ...
Scientific data 5, 2018
22018
JASPAR: an open-access database of transcription factor binding profiles
O Fornes
F1000Research 7, 2018
12018
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
B Ballester, F Parcy, A Khan, O Fornés, A Stigliani, M Gheorghe, ...
12018
RADI (Reduced Alphabet Direct Information): Improving execution time for direct-coupling analysis
B Anton, M Besalu, O Fornes, J Bonet, G De las Cuevas, ...
bioRxiv, 406603, 2018
12018
Altered transcription factor binding events predict personalized gene expression and confer insight into functional cis-regulatory variants
W Shi, O Fornes, WW Wasserman
bioRxiv, 228155, 2017
12017
rAAV-Compatible MiniPromoters with Restricted Expression in the Retinal ON Bipolar, Müller Glia, and Cone Photoreceptor cells, the Corneal Stroma, and the Endothelial cells of …
A Korecki, JC Vargas, J Agostinone, RA Farkas, O Fornes, SL Lam, ...
Investigative Ophthalmology & Visual Science 60 (9), 1331-1331, 2019
2019
Bioinformatics design of MiniPromoters for targeted delivery of expression
O Fornes, RA Farkas, AJ Korecki, SL Lam, JW Hickmott, DJ Arenillas, ...
F1000Research 7, 2018
2018
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